Pseudomonas sp. VLB120, PVLB_24840
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTTCGACCCGCGAAAACTCGGCGAACTTCCCAGCCTGCATTGGGGCAGCGCCCAGCGCGAGTATCAGTGGGAACTGTTCCAGGGCGAGGACATGACGCAC AGCCTGGTGATCCCGCATACACCGCGCATGGTCACTGACGACTTGTTCGCGCTACGCCACTTCGTCGTGGCTGGCGTGGGTATCGCCCACTTGCCACGGG TAGCGGTGCGCGAGGACCTGGCCGAGGGGCGGCTGGTGGAGTTGCTGCCGCAGTGGCACCCGCGCTGCGGTATCGTGCACGCGATCTTCCCGTCGCGGCG GGGCTTGCTGCCTTCGGTGCGGTCGTTGATCGATCATCTGGCGGAAGAGTTCGCGGCCAGCGACATGGCTTGATTCGGGTCCCCTGGCCTTATCGCCGGC AAGCAGGCTCCCACGGGAGCGGCCCAATGCCTCTTGCCCGTGATGAGGCCAGCACACCCATACAAGAACCTCACACGTCGCTGGTGCACAGTCCCGGCTC
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| DNA Sequence for Gene |
>PVLB_24840
ATGCATAACGGAACCTTACCCCCTCGCGCCCTGCTGATCGCCTTCGCCGCCCTCGGCCCTGCTTTTGCACTGGCCGACGAGCCTGGCTGGTCACTGCTCA GCCGCAACTATTTCTTGCACAGTGACTTCCGCTCGCCGTCACCCAGCGGCCAAAGCTATCGCCAGGAATGGGCCCAGGGTTTCATCGGTGAAATTCGCTC GGGCTTCACCGAGGGCACGGTCGGCCTCGGTGTGGATGCCCACGGTTTCCTGGGGCTCAAGCTCGACGGTGGACGCGGTCACGCCGGCACGGGTCTGTTG CCCCGAGACAGCGACGGGCGCGCTGAGTCTGACTACTCCAGCGCAGGCGCTGCGCTGAAAATGCGCCTGGGCAACACCGTGCTGCGCTATGGCGAAATGA CAGTGGAAACGCCAGTGTTCGATACCGGCGATAAGCGCCTGCACCCGGAGTACGCCACAGGCTGGTTACTGGAAAACATCGACTTAACCGACTGGCGCGT GCAAGCCGGGCGATTCACCGCGTTCAATAGTCAAGACAACAGTTCGACGCACGACGACTTCGCCGGCTACGGCGCCAGCACCCATGGGCGCGCGATCAGC CTGGCGGGTGTCACTTTCGCCCCCAACGGTCCGTTTGGCGGAGCACTGTTCGCCTCGCAGCTGCAGGACACCTGGAACCAGGCCTACCTCAACCTGAACC TGGCGGAAGGCCGCTGGCGGCTGGACGGCAACCTCTATCACACCCGCGATACCGGTGCAGCCAGTGCAGGCAACATCGACACCCTGGCTTACAGTCTGGC GGCCAAGTACAGAGCCGGCGCCCAGGCCGTGACCCTTGCCTATCAGAAGGTCGAGGGCGACACCCCGTTCGACTTCGTCGGCGGCGACTCCATCTACCTC GCCAACTCGATCAAGTATGCAGACTTCAACGGACCCGGCGAACGCTCGTGGCAACTGCGCTACGACCTGGATTTCGCCACCCTCGGTGTGCCCGGCCTGA GCGTGATGGGGCGCTACGTCAGCGGGCGCGGCATCGATGGCAGCCATGCTCCGGCGGCGGGTGCCTATGTGTCGCAACAGGGCAAAGGAGGACGCCACTG GGAGCGTGACCTGGACCTCAAGTACGTGGTGCAGTCCGGCGCTGCCAAGGACCTCGGCGTGTCGCTGTCCCACGTCAGCCATCGCGCCAACGAGGCCCAG GCGGGCGACGATATCGACCGCCTGTACCTCATCATCGAATACCCGCTCAAAGGGGTTTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTGAATCGCTGGCAAGCCGGCACCTACAAGATCGTATAGGCGCCAGGTTGCCAACGGTGGGGGCCCTGATGGCCCCCGCTTACCTCAGAACGCGAAGCA CGAACAACCCAACGCTCCCCAGAAGCCCTGGAAGTCACTGACCGGCACACTGGAATGGCGAGCCTTCTCATGACTGTGGGCATGCACCCCACATGGGCCA ACGCACTGGTGCAAGGCCGCCGCCATTGGCGCGCCGGCACGCCAGTGCCCTGGCACCTTGGCCACTGGCGACCACTCTGGCAGCACGGGCACCTGCGCCG GGCCGAGCTTGTCGAACTCTGCCGCGCCGTACACCACCTTGCCATCGACGATGGTCAGCACCGACTCGATCCCTTTGATGGCTTCTTCCTCGACGCTGAA GAAGTCCAGCGACAGTGCGGCCAGGTCTGCCAGCTGGCCGACCTTGATCTGACCTTTCTTGCCCTGCTCGCTGGAGAACCAGGCGCTGCCATGGGTGAAC
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| Amino Acid Sequence |
>outer membrane porin
MHNGTLPPRALLIAFAALGPAFALADEPGWSLLSRNYFLHSDFRSPSPSGQSYRQEWAQGFIGEIRSGFTEGTVGLGVDAHGFLGLKLDGGRGHAGTGLL PRDSDGRAESDYSSAGAALKMRLGNTVLRYGEMTVETPVFDTGDKRLHPEYATGWLLENIDLTDWRVQAGRFTAFNSQDNSSTHDDFAGYGASTHGRAIS LAGVTFAPNGPFGGALFASQLQDTWNQAYLNLNLAEGRWRLDGNLYHTRDTGAASAGNIDTLAYSLAAKYRAGAQAVTLAYQKVEGDTPFDFVGGDSIYL ANSIKYADFNGPGERSWQLRYDLDFATLGVPGLSVMGRYVSGRGIDGSHAPAAGAYVSQQGKGGRHWERDLDLKYVVQSGAAKDLGVSLSHVSHRANEAQ AGDDIDRLYLIIEYPLKGVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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