Pseudomonas sp. VLB120, PVLB_20220
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGGCAGGCTGTGCAGGAGCAGGGTCTGGCCAGGCTTGCCGGCCAGGTCGCCACGCTTGAGCAGGGCAGCAATGGCGCCGTCGGAGGCTTGGTCGACGG CCTTGGCGACAGCGCCGAGCTTACGACCTTCGCCTACTGGTACGACCAGCGTTGCGGTTTTCACAGATGCAGCAGCTACGCTTTTTACAACCAGTTCCAT GTCAGGGTCCCCGAATGATCTTTACCGTAGGCGCTGAATGTTCGCGTGCGCCGGGCAGGCTTGGCCGCGTGGTCGCGTGCCAGTGGAAAAGCTGCCAGTT TGAGCCTGCGACAAGCGTGCTGACAACCCCGACGTGCGGCTTCATGCGCGGCCAAGTGACAGGCGCGGTCAATCACAGGATAATGCGCGCACTTTTATGG AGGTTCGCCTTTGGCGAACCAGCATTGGTCTGGCTGTACTACGTCATAGTCTGGCGCCATTGTTTGGCAGTCCGCCCCTGACAACCCAGGAGTGTCTGGT
|
|
| DNA Sequence for Gene |
>PVLB_20220
TTGATCGTCTTTCGTTATCTGTCCCGCGAGGTCCTGGTGACCTTGAGCGCCGTCAGCGCTGTGCTGCTGGTGATCATCATGAGCGGGCGCTTCATCAAGT ACCTGGCCCAGGCCGCCCAAGGCGTGCTCGACCCGAGTGTACTGTTCCTGATCATGGGTTTCCGCCTGCCGGGTTTCCTGCAGCTGATTCTCCCACTGGG CCTGTTCCTCGGCATCCTGCTGGCCTATGGCCGGTTATACCTGGAAAGCGAGATGACCGTGCTGTCGGCCACCGGCATGAGCCAGCAGCGCCTGCTGGGC CTGACCATGGCCCCGGCGGCGCTGGTGGCATTGCTGGTCGCGTGGCTGAGCCTGAGCCTTGCGCCGCTGGGCGTTGCCCAGGTGCAGCAAATCATCAGCC AGCAGGACGCGCTGACCGAATTCGACACCCTGGTGCCGGGGCGTTTCCAGACCTTGCGTGATGGCTCGCGGGTGACCTACACCGAGCAGCTTTCGGACGA CCGCATCAACTTGGGTGGCGTGTTCATCTCCGAGAAACGCTTCAACCAGGACAAGACCAAGGACCGCGCTCCTTCGGTGCTGGTCGCCGAGAAAGGTCAC CAGGAAGTGCAGGCCGACGGCAACCGCTACCTGATCCTGGAAAATGGCTATCGCTATGACGGCAACCCTGGCCAGGCTGACTACCGTGCCATCAAGTACG ACACCTACGGCGTATTGCTACCCAAGCCTGAAGTCAGCGAGGAAGTGACCGAGCGCGAAGCGATCCCGACCTCCCAACTGATCGGCCAGAAAGGCCTGCG TGAGCGCGCCGAGCTGCAATGGCGTCTGTCGCTGCCGATCCTGGTGTTCATCGTGACCGTGCTGGCAGTGCCGCTGGCCAAGGTCAACCCACGCCAGGGC CGCTTCCTCAAGCTGCTGCCGGCGATTCTTCTGTACATGGCCTACCTGACGATGCTGATTTCCGTACGTGGCGCCCTTGAGAAGGGCAAGTTGCCGATTG GCCTGGGTATCTGGTGGGTGCATGGACTGTTCCTGCTCATCGGCCTGGGCCTGATGTATTGGGAACCGCTGCGTCTCAAGCGCGCTGCCCGTCGTGCGGA GGTGGCCCATGGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTCGATCGCTATATCGGCCAGAGCGTGCTGCTGGCCATTCTGGCGGTGCTGGGGATCATCCTCGGCCTGGCCTCGCTGTTTGCCTTCATCGACGAGATG GGCGACCTGAGCGACACCTACACGGTGATGGAGGCAGGTAACTTCGTCCTGCTGACCGCACCGCGTCGTCTGTACGAAATGCTGCCGATGGCCGCGCTGA TCGGCTGCCTGGTCGGCCTGGGCAGCCTGGCCAGCAGTAGTGAGCTGACCATCATGCGCGCCGCTGGCGTTTCCATCGGCCGTATCGTCTGGGCGGTGAT GAAGCCGATGCTGGTGCTGATGCTGGTGGGCCTCCTGATTGGCGAGTACGTGGCGCCGGTCACCGAAAACAAGGCCCAGGCCGACCGTTCCCTGGCCCAA GGCGGGGGAGAGGCACAAAGTTCCAAGCGCGGCATGTGGCACCGTCAGGGTGACGAGTTCGTGCACATCAACGCCGTGCAGCCCAACGGCCTGCTGCTGG
|
|
| Amino Acid Sequence |
>permease YjgP/YjgQ family protein
MIVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPSVLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLG LTMAPAALVALLVAWLSLSLAPLGVAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISEKRFNQDKTKDRAPSVLVAEKGH QEVQADGNRYLILENGYRYDGNPGQADYRAIKYDTYGVLLPKPEVSEEVTEREAIPTSQLIGQKGLRERAELQWRLSLPILVFIVTVLAVPLAKVNPRQG RFLKLLPAILLYMAYLTMLISVRGALEKGKLPIGLGIWWVHGLFLLIGLGLMYWEPLRLKRAARRAEVAHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|