Pseudomonas sp. VLB120, PVLB_14550 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. VLB120, complete genome. [Details]
DNA Sequence Upstream of Gene
TGGGCCTGGACCTGACGCAAGGTCTTGTCCGCCGGGCCGCCCCCCGTCCCCGGCTCATGGGGATCGCGGGCGCCAGTTTCGTCCAGCAGCGTATCGGGGC TCAGGTCATCGAGGGTGACATTGTCCTCGTGCAGGCTGTCACTGAGGGCTTCGCCACCGGTCATGCCGCTTTCGGCGACGCGCCGGGGCGGATAGTCCTC GTGCACCTCCCGCGCCGGACGCTCGTCGCCGATGCGACCCCTGCGCTCATCGCGGCGCTCGCTGAAATCCAGTTCATGGACACTGCCCATACGGTCTTCG GTGTCGTCTATTTCGACCTGAGGTCTTGGGTCATCGGGTGTAGCCATGAGGGTTCTCCGTCTGTGGGCTTCATTCGGTCGACTACCCTCATGGGTAAATG ATTCAGAGTTTCTGGCTGTGCGCGCCTCGCTTTTTTTGGAACTCCCCGTTCCTGCGCCCTCTCCCACTCTAGAGACCCGCGAATCGTTTCGGAGCCCGCC
DNA Sequence for Gene
>PVLB_14550 |ligD
ATGGCCAAGCCCCTGCAGGAGTACCAGCGCAAGCGCGACTTCAAAGCCACCCCCGAGCCGGCTGGCAAGCGCGCACGCGCACGCCCCGCCCATGGGCTGC AGTACTGCATTCAGAAGCATGACGCCAGCCACCTGCATTATGACTTTCGCCTGGAACTCGATGGCACCTTGAAAAGCTGGGCGATCCCCAAGGGCCCCTC ACTCGACCCCAAGGTCCGGCGCCTGGCTGTGCATGTGGAGGATCACCCGCTGGACTACGCCAATTTCGAAGGCCACATCCCCGAGGGACACTACGGTGCC GGGGACGTGATCGTCTGGGATCGGGGCATCTGGGAGCCCGAGGGCGACCCGCGCGAAGCCTATGCCAAAGGCAAGCTGCGCTTTGCCCTGCAAGGCGAGA AGCTGTCGGGTGTCTGGAACCTGTTCCGCACCCATCTGGCCGGCAAGAAAGAGCAGTGGATGCTGGTCAAGTCCCATGACGACCAGGCCCGCAGCGAAGC CGATTACAGCATCGTCGAGGCCCTGCCGGACAGCGTGCTCAGCGACCGTACCCTGCTGCCGCGGCGCCCGACCAACGCCAGACCCGCCAAGCCCAGGCGC AAGGCCAAACCCAGCGCCCTGCCGGACAAGCTTCAACCCCAGTTGGCCACCCTGGTCGATTCGCCTCCCAGCGGCGACTGGCACTATGAAGTGAAGTTCG ATGGCTACCGCATCCTGGCCCGCATCGACGCAGACGATGTGCGCCTGTTCACCCGCAATGGTCACGACTGGAGCGCCAAGCTATCGCGCCAGGTCGAGGC ACTCAAGGCGCTCGGGCTCGATTCGGCTTGGCTGGATGGCGAGATGGTAGTGGTCGACGAGAACGGCGGCACCGACTTCCAGGCCCTGCAGAACGCCTTC GACACCGAACACGACGACAACATCACCTATTACCTGTTCGACTTGCTGTACCTGAGCGGCAAGGACCTGCGTGAACTGCCCGTGCAAGACCGCCGGGCAA CCCTGGCCAAACTGCTTGAGCACAACACATCGGACACGCTTAAGTTTTCCGAGGACTTCAACCAACCGGTCGACTCACTGCTCGCCAGCGCCTGCCGGCT CGGACTGGAAGGCCTGATCGGCAAACGTGCCGACAGCGTCTACATGAGCCGGCGCAGCAGCGACTGGATCAAGCTCAAGTGCAAGCAGCGCCAGGAATTC GTGATCGTTGGCTACACCGATCCCAAAGGCAGCCGTCACGGCTTCGGCGCCCTGCTGCTGGCCCTGCACGACAAAGACAGCGGCCAGTTGCGCTACGCCG GCAAGGTAGGCACCGGTTTCAGCGCCGCCACCCTGGCGAGCATCCGCGACCGTCTGAAACCACTTCAGACCGCCACGCCACCCTTGCCCAAGCCGCCGAC CGGGGCCGATGCCCGCGGCGTGCACTGGCTAAAACCGCGCCTGCTGGCCGAGGTCGCCTACGCCCAGATGACCCGCAGCGGCATCGTGCGCCACTCGGTA TTCCACGGCCTGCGCGACGACAAGCCTGCAACCGCCATCGACCTGGAGCGCGCCGTGCCCGCCAAGACCGCAACGACGGCTCAGCCGAACGGGCTGGGCA AATTACGCCTCACCCACCCCGAACGTGTCATCGACCCGACCAGCGGCACCACCAAACGCCAGATCGCGCAGTACTACGCACAGGTCGCCGACTGGCTGCT GCCACAACTCAAGGACCGTCCCGTGGCGCTGGTTCGCGCACCGGACGGTCTTGACGGTGAATTGTTCTTTCAGAAGAACGCCGGTCAGTTGCACATTCCC CATGTCGTCAGCTACAGCAAGGCCGAAGCCGGCCAGGCGGCGATGGTGCTCAACCGCGCCGACAGCCTGCTGGGAGCGGTGCAGATGAACATGCTGGAAC TTCACACCTGGAACGCCACCGACAAGGACTTCGACCGCCCCGACCGCTTCGTCCTGGATCTGGACCCTGACCCGGCACTGCCGTGGAAAGCCATGCTCGA GGCCACCCAGCTGACCCTCACCCTGCTCGATGAGTTGGGCCTGAAGACGTTCCTCAAGACCAGTGGCGGCAAGGGCATGCACCTGGTCGTGCCGCTGACC CGCAGAGCCGGATGGGAGCACGTGAAGGAGTTCAGTCACGCTATCGTCGAACACATGGCGAACCTCTTCCCGGATCGGCTCAGCGCCGTGTCCGGGCCCA AAAACAGGGTGGGTAAGATCTTCATCGACTACCTGCGCAACGGCAAAGGCGCCACCACCGTGGCCGCCTATTCGCTGCGCGCGCGCGAAGGCCTGCCGGT GTCGGTACCGATCTGGCGCGAGGAATTGACGCAGCTCAAGGGGGCCAACCAATGGGACATCGGCAACCTGCACGAACGGCTGGCGCAGGTGGACGACCCG TGGGCCGAGATGAGCAAGACCCGGCAGTCGATCACCGCACGCATGCGCAAGCAACTGGGGCTCGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGGGGGGGCTGATCGACCTGCTGCAATGGCCGGCGATGCTGCTCACGCTCGCAGCGGCCTGGTGCATCGGCTCGCGCCAACCCCGTCGGCGACGCATGGG ATTCTGCTGCTTCATTGGCAGCAACGTGCTCTGGGTGGCATGGGGCTGGCAGGTGCAAGCCTGGGCATTGATCGTCCTGCAGTTCTGTCTGTGCGCCATG AACCTGCGGGGGTGGAAGAAGAATGTGCAAGGAGGGAGCAGCCCATGAGTCTCGACCCGGATTTCGACCCAGGCCATCTCGACCGGCTGCTGCAGCGCTT CGGCGCACGACCGCGCCCTATCGACCTGGCAGGCTCGCTGCCAGCGCTGTTGCATGCCTTGCAGGCCGACCACCTGGACTTGCTGCCGCTCCCAGGCCAA GGCAAGACCCTGCAACGCTGGCAAGCCCTGGCGCGGGTGGCGGCTTGCGATCTAGGTCTGGCGAAACTCTACGAAGGCCATACCGATGCCCTGGCGATCC
Amino Acid Sequence
>ATP-dependent DNA ligase
MAKPLQEYQRKRDFKATPEPAGKRARARPAHGLQYCIQKHDASHLHYDFRLELDGTLKSWAIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGA GDVIVWDRGIWEPEGDPREAYAKGKLRFALQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDDQARSEADYSIVEALPDSVLSDRTLLPRRPTNARPAKPRR KAKPSALPDKLQPQLATLVDSPPSGDWHYEVKFDGYRILARIDADDVRLFTRNGHDWSAKLSRQVEALKALGLDSAWLDGEMVVVDENGGTDFQALQNAF DTEHDDNITYYLFDLLYLSGKDLRELPVQDRRATLAKLLEHNTSDTLKFSEDFNQPVDSLLASACRLGLEGLIGKRADSVYMSRRSSDWIKLKCKQRQEF VIVGYTDPKGSRHGFGALLLALHDKDSGQLRYAGKVGTGFSAATLASIRDRLKPLQTATPPLPKPPTGADARGVHWLKPRLLAEVAYAQMTRSGIVRHSV FHGLRDDKPATAIDLERAVPAKTATTAQPNGLGKLRLTHPERVIDPTSGTTKRQIAQYYAQVADWLLPQLKDRPVALVRAPDGLDGELFFQKNAGQLHIP HVVSYSKAEAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKDFDRPDRFVLDLDPDPALPWKAMLEATQLTLTLLDELGLKTFLKTSGGKGMHLVVPLT RRAGWEHVKEFSHAIVEHMANLFPDRLSAVSGPKNRVGKIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELTQLKGANQWDIGNLHERLAQVDDP WAEMSKTRQSITARMRKQLGLA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site