Pseudomonas sp. VLB120, PVLB_09885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCGTGCCAACTGGCGGCGTGAAGATGCTGCCATGGCGTCCGTCGCCGCTCATCTGGCGAAGATGCTCAGCACCCGGGCCGGCAGCGTGCAGACGCTTG CCGACTACGGGTTGCCCGATCTCAACGACATGCGCCTGAGCCTGCACGACGCGCTCAGTCAGGCCCGCCAGGCCATCGAGCATTTCATCGAGGCCTACGA GCCGCGCTTGTCGGATGTCAGGGTGATTTCAAGACCGCGTGATCACGATCAGCTCAAGCTCGCTTTCAGTATCGAAGGCCAGCTTGAGGTGAACGGTATC AAGCGCCAGGTCAGTTTTGCCGCGCGCCTGGATGGCAGCGGGCAAGTCAGCGTAGGTCAGGGAGACTGGTGATGTTGCCTTGCACATGACTGGGCTCTCC CTGTGACTTTTTGACCACCACCGGCTAGCCGCACGCCGTCTGCCAGGGACTGCTCAGGCAGCCACGGTGGTACCCAGACCGAATTCAGGCGAAACGACAG
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| DNA Sequence for Gene |
>PVLB_09885
ATGTCCTTCAATCATTACTACCAAAGCGAGCTGACGGCCCTGCGCCAGCTAGGTCGCCGTTTCGCCGAGCGCAGCCCGGCGTTGGCGCCGTACCTGGGCC AGGCCGGACGCGACCCCGATGTCGAGCGGCTGCTCGAAGGCTTTGCCTTTCTCACGGGTCGTTTACGCCAGAAGCTCGACGACGAGCTGCCTGAGCTCAC TCACTCACTGATGTTGCTGCTGTGGCCCAACTACATGCGTCCGTTGCCAGCCTTCAGCATCCTGCAGTTCGACCCGCTGCGCCAGGCCGGTCCGGCACTG CTGGTCGAGCGCGACACGCCAGTGGAAGGTCGGCCTATCGATGGGGTCAGCTGCCGCTTTCGCACCTGTTACCCCACCGAGGTCCTGCCGCTGAAACTGA GCGCGCTCAATTACTCGCTCAATGGTCAGGGCGCGCTGCTCAGCCTGCGCCTGGACATGAACTGCGATGGCCATGTCGGCGACGTCAAGCTCAGCCGCCT GCGCCTGCACCTGGCCGGAGAGCGCTACATCAGCCAGATGCTCTACTTGAGCCTGTTGCGCGGACTGGCTGGCATCGAGCTCATAGCGCTGTGCAGCAAT GGCAAACCGTTGCTCAACGACGCTGGCGATCCGCTGGTCCTCAAGGCGCGGGATGCCAAGGTTCATCCGGTAGGGTTCGCCGAGGAAGAGGCGCTGATTC CTTACCCGTTGAACACGTTTCGTGGCTATCGCTTCTTGCAGGAGTACTTCGCCTTCCAGGACAAGTTCCTGTTCGTCGATGTCACTGGCCTGGACGTTCT GCAGCGGCTGCCCGAGGAAACCCTCAAGCAGGTGCACGGCGTGGAGGTGCGTTTCGATATCCGCAAAGCCGAAGCCCAGCGCCTGCGCCCGACCCTGGAC AATGTGAAACTGTACTGCACGCCAATCGTCAACCTGTTCAAGCACGACGCCTTGCCGATCCGCCTGGACGGCAAGCAGGACGAATACCTGCTGTTGCCTG CCGAGCTCGACCCCGAGCACTGCGGGGTATTCTCGGTCGATGGTGTCACCGGCTGGAGCCCCGGAGGGCTGGGCTACCAAGAATACGTGCCCTTCGAGTC CTTCGAGCACGACCCCAGCTTCGATGTGCCGCACAGCCGATCGCACTACAGCCTGCGCCAACGCTCTTCGCTGCTGCACGATGGCCTCGATACCTACCTG AGCTTCGGTGTGCATGGCGGCGAGTTCCACGAGACCTTGTCGATCGAGCTGACGTGCACCAATCAGAACCTGCCGCGGCGGCTCAAACTCGGTGACATCT GCATGCTGAGCGAGCAGACCCCCGAGTTCCTGACCTTCCGCAACATCACTGCGGTCACCTCCAGTTATGCACCGCCGCTCAATCGCGATTTTCTTTGGAA GCTGATCAGCAACATGTCGCTGAACTACCTGTCGCTGGCCGATGTGGACGCGCTGAAGGTCATCCTCGAAACCTATGACCTGCCGCGCTACTACGACCAG CACGCGGAGAAGGTCAGCCGACGCCTGCTCGGTGGGCTCAAGTCGATCCGCCACCAGCATGTCGACCGCTTGCACCGTGGCCTGCCGCTACGCGGCCTGC GCACCGAACTGACGATCGATCCCGAGGGTTACATCGGTGAAGGCGACCTGTTCGTCTTCGCCTCGGTGCTCAACGAGTTCTTCGCACTCTACGCCAGCCT CAACTCGTACCACGAGCTGCGGGTGAAAAGCACACAAGGGGAGGTGTACCAATGGACACCACGTATGGGCCTGCAGCCCCTGCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGCTGAGCCGGAGCATCCGTGAATACTCGCTGTTCCAGGCGGTTCTGCTGGTCACCGAGCAGTTGCGCGAGCATTACCCGTACCTGGAGGACGACGA GCTGTATGACCTGCTCGAGTTCGAGGCCAACCCGAGCCTGGGCTTTCCGCGCAGCGATGTCGACCGCGTCGAGTTCTTCCGCGAGCACGGCCAGTTGCGT GCGCGTCTTCGATTCAACCTGGTGAGCCTGATCGGTTCCAGCTCGCCGCTGCCCGCGTTCTATGGCGAACAGGCGTTGGGTGACAGTGAAGATGGCAACC CCACGCGCCAGTTTCTCGACCTGTTCCACCACCGGCTGCAACGCTTGCTCCTGCCGATCTGGCAAAAGTACCGCTACCGCGCCAGCTTCAAGAGCGGGGC GCTGGATGGCTTCTCATCGCACCTGTTCGCCTTGATCGGCCTGGGCGGTGAGGAGATCCGCAGGGCAAAGGAACTGAACTGGAAGCGCCTACTGCCGTAC
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| Amino Acid Sequence |
>hypothetical protein
MSFNHYYQSELTALRQLGRRFAERSPALAPYLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMLLLWPNYMRPLPAFSILQFDPLRQAGPAL LVERDTPVEGRPIDGVSCRFRTCYPTEVLPLKLSALNYSLNGQGALLSLRLDMNCDGHVGDVKLSRLRLHLAGERYISQMLYLSLLRGLAGIELIALCSN GKPLLNDAGDPLVLKARDAKVHPVGFAEEEALIPYPLNTFRGYRFLQEYFAFQDKFLFVDVTGLDVLQRLPEETLKQVHGVEVRFDIRKAEAQRLRPTLD NVKLYCTPIVNLFKHDALPIRLDGKQDEYLLLPAELDPEHCGVFSVDGVTGWSPGGLGYQEYVPFESFEHDPSFDVPHSRSHYSLRQRSSLLHDGLDTYL SFGVHGGEFHETLSIELTCTNQNLPRRLKLGDICMLSEQTPEFLTFRNITAVTSSYAPPLNRDFLWKLISNMSLNYLSLADVDALKVILETYDLPRYYDQ HAEKVSRRLLGGLKSIRHQHVDRLHRGLPLRGLRTELTIDPEGYIGEGDLFVFASVLNEFFALYASLNSYHELRVKSTQGEVYQWTPRMGLQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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