Pseudomonas sp. VLB120, PVLB_08320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCTCACAGGCCTTTATGGCAGGCCCTTACCTTAACCGATGATGGTTTATCCGGCGGAGGAACCTCTACGCCACCATTTGCCCCTTGGACCTCGAGGCGA TTGCAATCGTTCGGTCGGCTGGGCACTCACAAATAGTAGGCGCCGCAGGCAGGATTGCTCAAGGTGGGAGCGATTAAAAAGCTCGGAACTCCACGGCAAA CCACCCACCCTGGACTCCGGAACAGCAGCCGGATGCTCTTGGGCTTAAGACGTCAACCGACAGTTAAAGTCACCGTTAGTTCAACAAAAAAGTTCCCACG CTACAAACGCTTGCGTCACCTGTACGGTTTTTTCACAAATCCCCTACAAATCTTGTCGGCTACCCCTTCGCCAACATTTTTTTTGCAGTTCTTGCGCTTA GTCAGTTTACTTACTACAAGTAATGGGTACTATGTACGCCGGCCAGTTTCTCTTTTCCGAGAGATGGCTATTTAATAGAAAGTCCTTGAAGGGGAACACG
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| DNA Sequence for Gene |
>PVLB_08320
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCTCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGTATCCAAAGAAACCGAAGCTCGTCTGACTGCGA CTGAAGACGCAGCAGCTCGCGCTCAAGCTCGTGCTGACGAAGCCTACCGTAAGGCTGACGACGCACTGGCAGCCGCTCAGAAGGCTCAGCAGACCGCTGA CGAAGCCAACGAGCGCGCTCTGCGTATGCTGGACAAAGCCAGCCGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAATCCTCACGGATTGTTGAGAAGCCGACCCACTTGTGGGTCGGCTTTTTTATTGCCTGTCGTTTTTACCTGCCTGTCTGCGGCAGAAACGAAAAGGCCT GCACTAAGGCAGGCCCTAAAGGCATCGCGAAACGGCTTTACTGCAGTTCAGCCGGGATGCTCGACACCATCGGTGCCGCACCCTGGTTGTTGACCGGCAC TGCAATTTCAACCGGCATGCCATCTTCCGCGGCGACTACGTCACGCACCATGTCCCAGTTCATGCGCAGGTTGTTGGCCAGGTCTTCACGCTTGAGCAAC GCGTTGATGACCGCGGTGTGCTTGTCGACCACCGATGGGTTGCCATGATCGTCCAACGGCGTGTGAGCCTCCAGATAGACCTTGCCACCACTGATACCGA ACTTGTAAGGCTCGTTGATGATACGAACCGGCGTACCCACCGGCACCATCTTCGACAACTCCAACACGTTGTTGTTGAGCATGCGGAAGCAACCATGGCT
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| Amino Acid Sequence |
>outer membrane lipoprotein OprI
MNNVLKFSALALAAVLATGCSSVSKETEARLTATEDAAARAQARADEAYRKADDALAAAQKAQQTADEANERALRMLDKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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