Pseudomonas sp. VLB120, PVLB_08265

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 141 491 1.2E-103
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 183 492 3.01E-78
Pfam PF00672 HAMP domain IPR003660 HAMP domain 159 207 1.2E-8
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 162 492 3.6E-94
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 230 491 3.1E-70
Gene3D G3DSA:1.10.287.950 - - - 164 492 2.1E-72
SMART SM00304 HAMP_11 IPR003660 HAMP domain 162 215 1.6E-7
CDD cd06225 HAMP - - 168 207 1.39191E-6
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 303 459 3.0E-43
SMART SM00304 HAMP_11 IPR003660 HAMP domain 250 310 72.0
CDD cd11386 MCP_signal - - 257 452 3.03164E-54

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.