Pseudomonas sp. VLB120, PVLB_08105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGCAAAAGGGCGTGGATCATCTCCGAGGAAATGTCCATGAACATCGACACGAAGCCCAGCGCCCAGACACTGCGGGGAATTTTCGGCAGTACCAGGGT GGGTCCTGAGCGTTCGGATTTTTCGGCGGCGCGCATGGTTGGCCTCGGCTTCCTACCTTCGAAACTGTAGGAGTCATTGGGCAGGTTGCAACATTGCTGG TGTGCCGGGTTGTTCATGCCAGCCGACCCGCTTTGCCGGCGCTGCGACAGTGCCCGAAAAACGTCTGGGGGCGACGCGGCGACCGTGCTCCCACTCCTGA AGCGAACATACCGAACCCCCGCTTAGCGAAGTTCCGTCACAAACATGTAAATTTCGTAAATAAGATTTAAACACATTTGAGAATCATTATATTCACCATC CCTGTTGGCCCCACACAATGCTTGCCGGGCCGAAGGGCGAGGGGCCCGTCGGCGCGCAGGCCGGGCCGTGCCTTTGCCCATGACCGCAGGAGAAGTGTCG
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| DNA Sequence for Gene |
>PVLB_08105
ATGCAATCCAGAACCTCACCCAACAGCCTGGCCCTGGCGTTTGTCGCGCTGGCGTCGCCGGCCATGGTGGCGACTGCGGCCGAGGCCGAACAGCAACACA CCGGTGAGGTGGTGGAGGTTCCGATGGCCGACCCTGCGCTGGTGATCCAGGACACCTTGGTGACCGCCGAGCGTGAGGCACGCCAGGCGCTGGGTTCGTC GATCATCACTGCTGAAGATATCCAGCGTCACCCACCAGCCAATGACCTGTCCGACATCATTCGCCGCGAGCCGGGGGTCAACCTCACCGGCAACAGTGCC AGTGGCGCGCGGGGCAACAACCGCCAGATCGACCTGCGGGGCATGGGGCCGGAAAACACCCTGATCCTCATCGATGGCAAGCCCTCCAGTGCACGCAATG CGGTGCGTTATGGCTGGAACGGCGACCGCGACACCCGTGGCGAAACCAACTGGGTGCCGGCCGAGGCTGTCGAGCGCATCGAGATTCTTCGCGGTCCGGC TGCAGCGCGCTACGGCTCCGGCGCCATGGGCGGGGTGGTCAATATCATCACCAAACGCCCCACCGAAGCGTTCAAAGGCAACGTCAACCTGTACACCCAA CTGCCCCAGGACAGCGCCGAAGGGGCTAGCCAACGGACCAACTTCAACCTCAGCGGCGGGCTGACCGAAAACCTGGGGGGGCGGTTGTACGGAGGCCTGG CCAAGACCGATGCCGACGACCTGGACATCAACGCCAGCCATGCCAACAGCGCTTTGGTCGCTGGCCGTGAAGGGGTGCGCAACAAAGACATCAATGGTCT GCTGAGCTGGAAACTCAATGATGAGCATCGCCTCGAAGCCAGCGCAGGTTACAGCCGCCAGGGCAACATCTACGCTGGCGATACCATGAACAGCAACGGT GGCAGCAATGTCGAGCTGATCTCCAGCCTGTATGGCCACGAGACCAATGTCATGCAACGGAGCACCTACGACCTGACCCACCTGGGTGATTTCACCTGGG GCACCAGCAAGACCTCCCTGGCCTACGAGTACGTGCGCAACTGGCGTCTTAACGAAGGCCTGGCCGGTGGGCCTGAAGGGGCGATCAACGACACCGGGGC GGCTATGTCGCGCCTGCGCAACACCCGCCTGAGCAGCGAAGTGAACCTGCCGTTCGCCACGGGCAGCACCGAGCACGTGCTGACCCTGGGCGGTGAGTAC CTCTACGAGTCGCTCAACGACCAGGGCTCGTTCCGCCCGCAGAGCTTCGACCCCAGTGGCGCGGGCAACAACGTCATCAGCGGTTTCGACCGCAGCGACT CGAAGATGACCGCCAAGAGCTATGCGCTGTTCGTCGAGGACAACATCGTTATCGGTGACACCACCGTCACCCCTGGCCTGCGTTTCGACCATCACGAGAC CTTTGGCGACAACTTCAGCCCGAGCCTGAATGTGGCGCACAAGTTGACTGAGTCGTTGTCGCTCAAAGGGGGGATTGCCCGCGCCTACAAGACGCCGAAC CTGTACCAGTCCAACCCTAATTACCTGCTCTACAGCCGTGGTAACGGCTGCAGCGTGCAGCAGACCAACGCCGGTGGCTGCTACCTGCAAGGCAACGCCG ACCTGAAGCCGGAAATCAGCGTCAACAAGGAAGTCGGCCTGCTGTACGACCGTGGCACCTGGCGCACCAGCGCGACCTACTTTCGCAACGACTACAAGAA CAAGATCATCGGCGATACCGATGTGCTCTACACCATCAACAGTGGCCGTCGTGTGACCCAATGGGAAAACGCCGGCAAGGCGCGGGTCGAGGGTATCGAG GGCAACCTGTTCGTCGAGCTGAGCCCGACGGTGGACTGGAACACCAACCTGACCTGGATGCTCGACAACGACAACCGCGAAACCGGCGAGCCGCTGTCGG TGATCCCCGAGTACACGGTCAACACCACGCTGGACTGGCGTGCCACCGACAAGCTGTCGTTCCAGGTCGCCGGCACTTACTACGGCAAGCAGAAATCGCC GACCTACAACTTCCGCACCCAGGAAGACTACGACGAACAGGCGCAGCAGGATGTCGAAGCCTACGGGTTGGTGGATGTCAGTGCCGGGTACACGTTCAAC GCCAACTACAACGTGCGGGTAGGGGTGAACAACGTGTTCGACAAGCAGATCCTGCGCGGCGGCAATGCCAGCAGCTCGGGCGCCAACACCTACAACCAGC CAGGGCGCGCGTTATTCGCTTCGTTGAACATCTCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCATCGCCAGCAAGCCGGCCCCACACGACCCTTGTGGGAGTCGGCTTGTGGTGGTGACGAACCGCAGCGATGGGGCTGCACGCAGCCCCCTAGGAAAAAC ACCAAGGACCACTCGATGATCAGAGTCCCCGCCTGGCTGCAGATCCTCTCCCGCAGCTGCGCCGCGTTACTCGGCGGCTACGCCTTCAGTTACTCGGCCA CCGCTTGCCTTGCCCGTCTGCTGCCGCTATCGCCCGCCGACGCGGTGATCGTCTCGACCCTGCTGGCATTCGTCCTCTACACCGGCGCCATCCTCTGGGC CTTCGCCAGCCGTGACGCCTTGCGCGCCTGGGCGCCGCTCGTCCTGGCAGCGCCGCTGGCGCTCATCGGGTTCTGGCCCCAGACACTGGAGTGGCTGGCA TGAAAAACACGTTCACTCAATCCATGGCCTGGCTGCACACCTGGGCCGGGCTGATCTTCGGTTGGTTGCTGTTCGCCATTTTCGTCACCGGCACGTTGGC
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| Amino Acid Sequence |
>outer membrane receptor FepA
MQSRTSPNSLALAFVALASPAMVATAAEAEQQHTGEVVEVPMADPALVIQDTLVTAEREARQALGSSIITAEDIQRHPPANDLSDIIRREPGVNLTGNSA SGARGNNRQIDLRGMGPENTLILIDGKPSSARNAVRYGWNGDRDTRGETNWVPAEAVERIEILRGPAAARYGSGAMGGVVNIITKRPTEAFKGNVNLYTQ LPQDSAEGASQRTNFNLSGGLTENLGGRLYGGLAKTDADDLDINASHANSALVAGREGVRNKDINGLLSWKLNDEHRLEASAGYSRQGNIYAGDTMNSNG GSNVELISSLYGHETNVMQRSTYDLTHLGDFTWGTSKTSLAYEYVRNWRLNEGLAGGPEGAINDTGAAMSRLRNTRLSSEVNLPFATGSTEHVLTLGGEY LYESLNDQGSFRPQSFDPSGAGNNVISGFDRSDSKMTAKSYALFVEDNIVIGDTTVTPGLRFDHHETFGDNFSPSLNVAHKLTESLSLKGGIARAYKTPN LYQSNPNYLLYSRGNGCSVQQTNAGGCYLQGNADLKPEISVNKEVGLLYDRGTWRTSATYFRNDYKNKIIGDTDVLYTINSGRRVTQWENAGKARVEGIE GNLFVELSPTVDWNTNLTWMLDNDNRETGEPLSVIPEYTVNTTLDWRATDKLSFQVAGTYYGKQKSPTYNFRTQEDYDEQAQQDVEAYGLVDVSAGYTFN ANYNVRVGVNNVFDKQILRGGNASSSGANTYNQPGRALFASLNISF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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