Pseudomonas sp. VLB120, PVLB_06510

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0046417 chorismate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00830
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004106 chorismate mutase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001500
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004664 prephenate dehydratase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001500
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009094 L-phenylalanine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001500
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psv01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv00400 Phenylalanine, tyrosine and tryptophan biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.190.10:FF:000034 Chorismate mutase/prephenate dehydratase - - 179 260 2.9E-32
Pfam PF01842 ACT domain IPR002912 ACT domain 282 346 3.0E-11
PIRSF PIRSF001500 Chor_mut_pdt_Ppr IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase 1 364 0.0
SUPERFAMILY SSF55021 ACT-like IPR045865 ACT-like domain 266 361 5.99E-28
Gene3D G3DSA:3.40.190.10 - - - 176 260 2.2E-59
FunFam G3DSA:3.40.190.10:FF:000029 Chorismate mutase/Prephenate dehydratase - - 98 178 3.5E-36
NCBIfam TIGR01807 JCVI: chorismate mutase IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain 6 84 2.9E-32
Gene3D G3DSA:1.20.59.10 Chorismate mutase IPR036979 Chorismate mutase domain superfamily 1 93 1.6E-27
Coils Coil Coil - - 6 26 -
FunFam G3DSA:3.30.70.260:FF:000012 Prephenate dehydratase - - 274 364 7.2E-35
CDD cd13630 PBP2_PDT_1 - - 93 273 1.57346E-105
CDD cd04905 ACT_CM-PDT - - 281 360 4.59972E-39
Pfam PF00800 Prephenate dehydratase IPR001086 Prephenate dehydratase 96 273 3.3E-62
SMART SM00830 CM_2_4 IPR002701 Chorismate mutase II, prokaryotic-type 10 94 6.3E-29
Gene3D G3DSA:3.30.70.260 - - - 274 363 5.4E-28
Pfam PF01817 Chorismate mutase type II IPR002701 Chorismate mutase II, prokaryotic-type 10 92 1.2E-22
Gene3D G3DSA:3.40.190.10 - - - 98 269 2.2E-59
FunFam G3DSA:1.20.59.10:FF:000004 Prephenate dehydratase - - 4 95 3.2E-35
SUPERFAMILY SSF48600 Chorismate mutase II IPR036263 Chorismate mutase type II superfamily 5 98 1.53E-19
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 95 280 3.04E-61
PANTHER PTHR21022 PREPHENATE DEHYDRATASE P PROTEIN - - 25 360 8.5E-81

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.