Pseudomonas sp. VLB120, PVLB_04905
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GACGTGGGCTTCCTCGGTGCCGCCCAGGTGGACCGCTTCGGCAACATCAACACCACCGTGGTGGGTGACTACCATGCACCCAAGACCCGTCTGCCGGGTG CGGGTGGCGCGCCGGAAATTGCAGGTTCCGCCAAGCAAGTACTGATCATCCTCAAGCAGTCGACCCGTGCCTTCGTCGACAAGCTGGACTTCATCACCTC GGTCGGTCACGGCGAGGGTGGCGATTCGCGCAAGCGCCTGGGCCTGCCAGGTGACGGCCCTGTCGGGATCATCACCGACCTGTGCATCATGGAGCCTGAA GCTGGCACCAACGAGTTCGTGGTCACCTCGATTCACCCTGGCGTCACCCGCGAGCAGATCGTTGCCGCCACCGGCTGGGCGATCCGTTTCGCCGACGATG TGCAGACCACCAGCGCACCGACCGAAGTCGAACTGACCGCTCTGCGCGACCTTGAAGCCCGTACCGCCGTGGCCCATGGCCAGGTGGCAGGAGAAGCCTG
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| DNA Sequence for Gene |
>PVLB_04905
ATGCGTGACGTATTCATCTGTGACGCCATCCGCACCCCGATCGGCCGCTTCGGCGGTGCCCTGGCCGGTGTGCGTGCCGACGACCTCGCCGCAGTGCCGC TCAAGGCGCTGATCGAGCGCAACCCGTCGGTACAGTGGGACCAGGTCGATGAGGTGTTCTTCGGCTGCGCCAACCAGGCTGGCGAAGACAACCGCAACGT GGCGCGCATGGCGCTGCTGCTCGCGGGCCTGCCCGAGAGCATTCCCGGCGTCACCCTCAACCGTCTGTGTGCTTCGGGCATGGACGCTATCGGCACGGCC TTCCGCGCCATCGCCAGCGGCGAAATGGAGCTGGCCATTGCTGGCGGCGTCGAGTCGATGTCGCGTGCCCCGTTCGTCATGGGGAAAGCCGAGAGCGCTT ACTCGCGCAACATGAAGCTCGAAGACACCACCATCGGCTGGCGTTTCATCAACCCGCTGATGAAGAGCCAGTACGGCGTGGACTCGATGCCCGAGACCGC CGACAACGTCGCCGACGACTACCAGGTATCGCGTGCCGACCAGGATGCGTTTGCCTTGCGTAGCCAGCAGAAGGCCGCAGCGGCCCAGGCTGCCGGCTTC TTCGCCGAGGAAATCGTCCCCGTCCGCATCACCCACAAGAAGGGTGAGACCCTGGTCGAGCAGGATGAACATCTGCGTCCGGAGACCACCTTGGAAGCGC TGACCAAGCTCAAACCGGTCAATGGCCCGGACAAGACCGTCACCGCTGGCAACGCGTCGGGTGTCAACGACGGCGCCGCAGCCCTGATCCTGGCGTCGGC CGAGGCAGTGAAGAAACATGGCCTGACCCCACGTGCTCGAGTGCTCGGCATGGCCAGCGCCGGTGTGGCGCCCCGTGTCATGGGCATTGGCCCGGTACCG GCAGTGCGCAAGCTCACCGAGCGTCTGGGTGTGGCGGTTGGCGACTTCGATGTCATCGAGCTCAATGAAGCGTTCGCCAGCCAAGGCCTGGCGGTGCTGC GCGAGCTGGGGGTGGCCGATGACGCACCGCAGGTCAACCCCAATGGCGGCGCCATCGCCCTGGGCCACCCGCTGGGCATGAGTGGTGCGCGTCTGGTCCT GACTGCGCTTCACCAGTTGGAGAAGAGCGGTGGGCGTAAAGGCCTGGCGACCATGTGCGTGGGTGTAGGCCAAGGTCTCGCCCTGGCCATCGAACGGGTC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGTACCGGCGCTATTGCCGGCAAGTCGGCTCCTGCAGGGAACCACGCAATCCTTGTGGGTGCCGGCCTGCCGGCAATAGGGCCGGTAGCTACGACACA AGGCCAATTGCCAGCCTCCGTGCGGAACGAGTGTGTTACTAGGTATGTCTAGAATACCTATGACCCTCCAGGAGTAAACACACCATGACCTCAGCCTATT ACACCGGCGAAGAGCGCAGTAAACGCATCTTTGCCATTGTCGGTGCCTCTTCGGGCAACCTGGTGGAGTGGTTCGACTTTTACGTCTACGCCTTCTGCGC GATCTACTTCGCGCCGGCTTTCTTTCCCTCCGATGACCCCACCGTGCAGCTGCTGAACACCGCTGGCGTGTTCGCTGCCGGCTTTTTGATGCGGCCCATC GGTGGCTGGATCTTCGGCCGCCTGGCCGATCGTCATGGCCGCAAGAACTCCCTGATGATTTCGGTGCTGATGATGTGCGCCGGTTCGTTGATGATCGCCT
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| Amino Acid Sequence |
>beta-ketoadipyl CoA thiolase
MRDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIERNPSVQWDQVDEVFFGCANQAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTA FRAIASGEMELAIAGGVESMSRAPFVMGKAESAYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSRADQDAFALRSQQKAAAAQAAGF FAEEIVPVRITHKKGETLVEQDEHLRPETTLEALTKLKPVNGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASAGVAPRVMGIGPVP AVRKLTERLGVAVGDFDVIELNEAFASQGLAVLRELGVADDAPQVNPNGGAIALGHPLGMSGARLVLTALHQLEKSGGRKGLATMCVGVGQGLALAIERV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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