Pseudomonas sp. VLB120, PVLB_04225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0035438 | cyclic-di-GMP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF07238
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psv00051 | Fructose and mannose metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | psv02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF07238 | PilZ domain | IPR009875 | PilZ domain | 16 | 114 | 1.5E-11 |
| Gene3D | G3DSA:2.40.10.220 | predicted glycosyltransferase like domains | - | - | 12 | 121 | 2.6E-29 |
| Gene3D | G3DSA:2.40.50.100 | - | - | - | 198 | 290 | 1.1E-5 |
| PANTHER | PTHR30386 | MEMBRANE FUSION SUBUNIT OF EMRAB-TOLC MULTIDRUG EFFLUX PUMP | - | - | 261 | 325 | 8.6E-12 |
| Pfam | PF13437 | HlyD family secretion protein | - | - | 261 | 336 | 5.1E-8 |
| SUPERFAMILY | SSF141371 | PilZ domain-like | - | - | 10 | 127 | 3.53E-16 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.