Pseudomonas sp. VLB120, PVLB_02210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGATCCTCGAGACCCTGACCCAGCACGGCGGCCAGCAGATCATGGCCCAGGCCTACCTGCCCCAGATCAAGGACGGCGACAAGCGCATCCTGATGATC GACGGCGAGCCGGTCGACTATTGCCTGGCGCGCATTCCGGCCAGTGGCGAAACCCGTGGCAACCTGGCCGCCGGCGGCCGTGGCGAAGCCCGCCCGCTGA CCGAGCGCGACCGCTGGATCGCCGCCCAGGTGGGCCCGACCCTTCGAGAGAAGGGCCTACTGTTCGTCGGCCTGGATGTGATCGGCGACTACCTGACCGA AATCAACGTCACCAGCCCGACCTGCATCCGCGAGATCGATGCGGCCTACAACACGGACATCGGCGGCAAGCTGATGGACGCCATTGATCGCCAGTTGAAG ACGCGCTGACCGCCGACACGCGGCAAATACGCGGAGTGGGGTATGATGCCGGTCCTTTACAACTGACCTGCTGCCCCGCCCCGCGGTTGCTGGATACCTG
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| DNA Sequence for Gene |
>PVLB_02210
ATGACGCTGCCTGCCGACATCCCCGCCGACCTGCTGCCACCCCGCGTTCGCCCGGTGGACCGGCTTGGCTTCACCCTGTTCCTGGCTGTCCTGGTTCACC TGGCGCTGATCCTTGGTGTGGGCTTCAGCGCCGTCGAACCGGCGCAGATCCGTCACACCATGGACATCACCCTGGCCACCTTCAAGAGCGAGAAGCCGCC GGAGAAGGCCGACTTCCAGGCACAGAACGACCAGCAAGGCAGCGGTACCCTGGACAAAAAGGCGGTCCCGAAGACCACCGAGGTTGCACCGTTCCAGGAC AGCAAGATCAACAAGGTCACCCCTCCTCCAGCGGCGAAGCCTGACGTGGAGCCACCACCGGCGCCGCAAAAATCCGCAGTGGCCACCAAGGCGCCCAAAC CGCAGAAGGTCGAGCCCAAGCCCAAGGAGAGCAAACCGCAGCCCAAGCCTGCGGTGCCCGCACCGGACTTCGACAGCTCGCAATTGTCCAGCCAGATCGC CAGCCTCGAGGCCGAGTTGTCCCACGAGCAGCAGCTGTATGCCAAACGCCCGCGCATCCACCGGCTCAACGCGGCCTCGACCATGCGCGACAAGGGCGCC TGGTACAAAGAGGAGTGGCGCAAGAAGGTCGAACGGGTGGGCAACCTCAACTACCCCGAAGAGGCGCGCCGGCAGCAGATCTACGGCAACTTGCGGATGA TGGTGTCGATCAACCGCGATGGTTCGCTGTACGAGGTGCTGGTGCTGGAGTCATCCGGACAGCCAGTATTGGACCAGGCGGCGCAACGAATCGTGCGGCT GGCTGCGCCGTTTGCGCCGTTTACCGGGGATCTGGCGGAGTTCGATCGGCTGGAGATCATTCGGACCTGGCGATTTGCCCGTGGGGACCGGCTGTCCAGT AATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGAGAGGGTACGGTCTGGGGCTTGTGGTGGGGCGTGAATCGAGCGCCGCTCGCGCTGCGCATCGCGAGCAAGGCTCGCTCCTACGCTTTGTTCGGGCCG GTCACGCCAGCGTAATTAGCACCCGCCCCTCCCCGTAGGAGCGAGCCTTGCTCGCGATGCGCCGCACAAGCGGCGCTCAATCCCACAAACGCCAGCTTGT TCCGGGCCAGTCACGCCAGCATAACTTGCACCCGACACCGCTCCCCCTCGTAGGAGCGAGCCTTGCTCGCGATGCGCCGCACAAGCGGCGCTCAATCCCA CAAACGCCAGCTTGTTCCGGGCCAGTCACGCCAGCATAACTTGCACCCGACACCGCTCCCCCTCGTAGGAGCGAGCCTTGCTCGCGATGCGCCGCACAAG CGGCGCTCAATCCCACAAACGCCAGCTTGTTCCGGGCCAGTCACGCCAGCATAACTTGCACCCGACACCGCTCCCCCCTCGTAGGAGCGAGCCTTGCTCG
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| Amino Acid Sequence |
>TonB family protein
MTLPADIPADLLPPRVRPVDRLGFTLFLAVLVHLALILGVGFSAVEPAQIRHTMDITLATFKSEKPPEKADFQAQNDQQGSGTLDKKAVPKTTEVAPFQD SKINKVTPPPAAKPDVEPPPAPQKSAVATKAPKPQKVEPKPKESKPQPKPAVPAPDFDSSQLSSQIASLEAELSHEQQLYAKRPRIHRLNAASTMRDKGA WYKEEWRKKVERVGNLNYPEEARRQQIYGNLRMMVSINRDGSLYEVLVLESSGQPVLDQAAQRIVRLAAPFAPFTGDLAEFDRLEIIRTWRFARGDRLSS N
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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