Pseudomonas sp. VLB120, PVLB_02165
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGGCATGACAGCGGTTTGTTCACTTGGGAGTACCTCGAGCAACTGTGCCTGCGCCAGGAACAACTCTGGGCCGAGTACCTGGATGAACTGCACAAGGCCG GAAAATCCCGCGATCCCTCGGAATCCGTCGTCAAGCTGATGCTCTAGCTCAATGGCCGCACGCATTAGAGCGCATTTTCTAATCTCATCTGCTTGAATGC CTTAGTGACGACCCGCTACGGGTTGTCTTGCGCATTACATGAAAGTCGGGTAACCAATGGAGCTGGCAAGTTCCCTGCATCGCTATTCATGCGTTCGGGG GAGAGGCTGGTTGTTGTAGAGGTCGCGAGCGAAAGCAGGCTGTCTTCACACGCAGAATCCCCGCAGCTCATCACCGACACGCACCCGGTCGCAGTACCGC TGTTCCTTATCACTGGTCAACCGAGTAGTAGTACCGGGCTGTCGTCCGTGCACCTGTCACGGAAAACCGGTACGCGTCTCAGGACAACGGAGCGTCGTAG
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| DNA Sequence for Gene |
>PVLB_02165
ATGAGTAACAAGAACAACGATGAGTTGCAGCGGCAAGCCTCGGAAAACACCCTGGGGTTGAACCCGGTCATCGGCATTCGCCGCAAGGACCTGCTGAGCT CTGCTCGTACCGTACTGCGCCAGGCCGTGCGCCAACCCCTGCACAGTGCCAAGCACGTGGCGCATTTCGGCCTGGAATTGAAAAACGTGTTGCTGGGCAA GTCCGCCCTGAAACCCGAGAACGACGACCGTCGCTTCACCGATCCGGCCTGGAGCAACAACCCACTGTACCGTCGTTACCTGCAGACCTACCTGGCCTGG CGCAAGGAGCTGCACGACTGGATCGGTGAAAGCGACCTGTCCCCGCAAGACATCAGTCGCGGCCAGTTCGTCATCAACCTGATGACCGAAGCGATGGCGC CGACCAATACCCTGTCCAACCCGGCAGCAGTCAAACGCTTCTTCGAAACCGGCGGCAAGAGCCTGCTCGATGGCCTGTCCAATCTGGCCAAGGACCTCGT GCACAATGGCGGCATGCCCAGCCAGGTGAACATGAAGGCGTTTGAAGTGGGCAAGAACCTCGGCACCAGCGAGGGGGCGGTGGTGTACCGCAACGACGTG CTGGAGCTGATCCAGTACAGCCCGATCACCGAACAGGTGCACAGTCGCCCGCTGCTGGTGGTACCGCCGCAGATCAACAAGTTCTATGTCTTCGACCTGA GCCCGGAAAAGAGCCTGGCACGCTTCTGCCTGCGCTCCCAGCAGCAGACATTCATCATCAGCTGGCGCAACCCGACCAAGGCCCAGCGCGAATGGGGCCT GTCGACCTACATCGATGCGCTCAAGGAGGCGGTGGACGCCGTGCTGTCGATCACCGGCAGCAAGGACCTGAACATGCTCGGCGCCTGCTCCGGCGGCATC ACCTGCACCGCGCTGGTCGGGCACTACGCCGCACTGGGTGAGAAGAAGGTCAATGCCCTGACCTTGCTGGTCAGTGTGCTGGACACCACGGTGGACAACC AGGTCGCGCTGTTCGTCGACGAGCAGACCCTCGAGTCGGCCAAGCGCCACTCCTACCAGGCCGGCGTGCTCGAAGGCAGCGACATGGCCAAGGTCTTCGC CTGGATGCGCCCCAACGACCTGATCTGGAACTACTGGGTCAACAACTACCTGCTGGGCAACGAGCCACCGGTGTTCGACATCCTGTTCTGGAACAACGAC ACCACGCGCCTGCCGGCCGCCTTCCACGGCGACCTCATCGAGATGTTCAAGAACAACCCGCTGACCCGCCCCGACGCGCTGGAAGTGTGCGGCACAGCCA TCGACCTGAAACAGGTCAAATGCGATATCTATAGCCTTGCCGGTACTGCCGACCACATCACGCCATGGCAGTCATGCTACCGCTCGGCGCATCTGTTCGG TGGCAAGATCGAGTTCGTGCTTTCCAGCAGCGGCCATATCCAGAGCATTCTCAACCCGCCGGGCAACCCCAAGGCGCGCTTCATGACCGGTGCCGACCGC CCCGGCGACCCACTGGCCTGGCAGGAAAACGCCACCAAGCACGCCGACTCCTGGTGGCTGCACTGGCAAAGCTGGCTGGGCGAGCGTGCAGGCGAGCTCA AGAAAGCACCGACGCGCCTTGGCAACCGCACCTACGCTGCCGGGGAGGCATCGCCAGGCACCTACGTCCACGAACGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTGCACAGCCGTGGCCACCGAGCGGTGAGCCACGGCGCTACTTTCACCACAGAGTCACGCGCATGCCGCAACCTTACATATTCAGGACTGTCGAGCTGG ACAACCAGTCCATCCGCACCGCCGTCCGACCAGGCAAGCCGCACTTGACGCCGTTGCTGATATTCAATGGCATCGGTGCCAACCTGGAACTGGTGTTTCC GTTCATCGAGGCCCTGGACCCAGACCTGGAAGTCATCGCCTTCGATGTGCCCGGCGTCGGGGGTTCGTCGACCCCACGCCACCCCTATCGCTTTCCCGGC TTGGCCAAGCTTACCGCACGCATGCTCGACTACCTCGACTATGGCCAAGTCAACGTCATCGGAGTGTCCTGGGGCGGAGCGCTTGCCCAGCAATTCGCTC ATGACTACCCCGAGCGCTGCAAGAAACTGGTGCTGGCGGCGACTGCCGCGGGCGCGGTGATGGTGCCAGGCAAGCCCAAGGTGTTGTGGATGATGGCCAG
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase, class II
MSNKNNDELQRQASENTLGLNPVIGIRRKDLLSSARTVLRQAVRQPLHSAKHVAHFGLELKNVLLGKSALKPENDDRRFTDPAWSNNPLYRRYLQTYLAW RKELHDWIGESDLSPQDISRGQFVINLMTEAMAPTNTLSNPAAVKRFFETGGKSLLDGLSNLAKDLVHNGGMPSQVNMKAFEVGKNLGTSEGAVVYRNDV LELIQYSPITEQVHSRPLLVVPPQINKFYVFDLSPEKSLARFCLRSQQQTFIISWRNPTKAQREWGLSTYIDALKEAVDAVLSITGSKDLNMLGACSGGI TCTALVGHYAALGEKKVNALTLLVSVLDTTVDNQVALFVDEQTLESAKRHSYQAGVLEGSDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIEMFKNNPLTRPDALEVCGTAIDLKQVKCDIYSLAGTADHITPWQSCYRSAHLFGGKIEFVLSSSGHIQSILNPPGNPKARFMTGADR PGDPLAWQENATKHADSWWLHWQSWLGERAGELKKAPTRLGNRTYAAGEASPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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