Pseudomonas sp. 2-92, U367_RS0115550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold7.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCAGTAAAAAAGAGCCCGGCGAATGCCGGGCTTTTTCATGCGCCATGGAACCGAGTGACAAGCCTTGGCCACGCAGTCTCTGGAGAGGAATCAGCCTT TCTTATCTGTCGGAGAAATCACCATGACCATTGGCGCACTCGCAGCTCTGCCTATCGTTGGCGACCTCGTCAAAACCGCTGGCGACATCACCAAGTCCCT CGCACCGCTGGCCCAACCCTTTGCTGACGTCGCAGCCAAGGCTTTGGGCAAGATGCTTGACCAGACTTTCGAACCCACCCAGAAATCAGTGGATTTTTCG AACACACAGGAAATCGGAAAACGCACGCTGACGTTCTAAACGACCCGTCGCTGCGGCCTCGTAACGGGCAGGCGGACAGCAATCCGCCTCGCCTCCCGCT TCAAACCCGGTTTTACCCCAATGTTCCTTTGACTGCCCTCACCAGATTGCCAATACTCATGGCATATTGAGGCTACCCGCATGGAACAAGGAATGACCCT
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| DNA Sequence for Gene |
>U367_RS0115550
TTGAAGCTGGAACTCAAGAACAGCTTGTCGGTGAAGTTGCTACGGGTTGTGCTGCTGTCGGCATTGATCGTGGGCGTAGCGCTGAGCGTGGCGCAGATCG TTTTCGATGCCTACAAGACGCGCCAGGCCGTGGCCGGCGATGCCCAGCGCATCCTCGACATGTTTCGCGACCCCTCGACCCAGGCCGTCTACAGCCTGGA CCGCGAGATGGGCATGCAAGTGATTGAGGGCCTGTTCCAGGATGACGCCGTGCGCATGGCGTCCATCGGCCATCCCAACGAGACCATGCTGGCCGAAAAA AGCCGCGCCCTGCAGCAATCGTCCAGCCGTTGGTTGACCGATCTGATACTCGGCCAGGAACGCACATTCACCACCGCTTTGGTCGGCAAAGGCCCCTACA GCGAGTATTACGGCGACCTGAGCATCACCCTTGACACGGCCACCTACGGCAAGGGGTTTATTGTCAGTTCGGTGATCATCTTTATTTCCGGGGTGTTGCG CGCGCTGGCGATGGGGCTGGTGCTGTACCTGGTCTACCACTGGCTGCTGACCAAGCCGCTGTCACGGATCATCGAGCACCTGACCTCCATCAACCCCGAC CGGCCCAGCGAACACAAGATCCCGCAGCTCAAGGGCCACGAGCGCAACGAACTGGGGTTGTGGATCAATACTGCCAATCAGTTGCTTGAATCCATCGAAC GCAATACCCATCTGCGCCATGAAGCTGAAAGCAGCCTGCTGCGCATGGCGCAGTACGATTTCCTGACTGGCCTGCCGAACCGCCAAAAGCTACAGGAGCA GTTGGACAAGATCCTTATCGACGCCGGCCGCCGCCAGCGCCGTGTGGCTGTGCTGTGTGTGGGGCTGGACGACTTCAAAAGTGTCAACGAGCAGTTCACC TACCAGGCTGGCGACAAACTGCTATTGGCGTTGGCTGACCGCTTGCGCGCCCACAGCGGTCGCCTTGGCGCACTGGCCCGATTGGGCGGCGACCAGTTCG CGCTGGTGCAGGCCGATATCGACCAGCCCTACGAGGCCGCCGAACTGGCGCAAAGCATCCTCGATGACCTGGAAGCGGAATTCGCTCTCGACCACGAAGG CATCCGCCTGCGCGCCACGATCGGTATCACCCTGTTCCCGGAAGACGGCGACAGCACCGAAAAGCTGCTGCAGAAAGCCGAGCAGACCATGACCCTCGCC AAGACCCGCTCGCGCAATCGCTATCAGTTCTATATCGCCAGCGTTGACAGCGAAATGCGCCGTCGCCGTGAGCTGGAAAAAGACCTGCGCGACGCCCTCA GCCGCGACCAGTTCCACCTGGTGTACCAGCCGCAGATCAGCTACCGCGATCATCATGTGGTCGGCGTGGAAGCGCTGATCCGCTGGCAGCACCCGGAACA CGGCCTGGTGCCGCCGGATCTGTTTATCCCCTTGGCCGAGCAGAACGGCACTATCATCCCGATTGGCGAATGGGTGCTGGACCAGGCCTGCCGACAGCTA CGCGAATGGCACGACCTGGGTTTCACCGAGCTGCGCATGGCGGTCAACCTGTCCACCGTGCAGTTACACCACACCGAGTTGCCGCGGGTGGTCAACAACC TGATGCAGATCTACCGCCTGCCACCGCGCAGCCTGGAACTGGAAGTCACCGAGACCGGCCTGATGGAAGACATCAGCACCGCCGCTCAGCACCTGCTGAG CCTGCGCCGTTCCGGAGCATTGATTGCGATTGATGACTTCGGCACCGGCTACTCATCCCTCAGCTATCTAAAAAGCCTACCTCTGGACAAGATCAAGATC GACAAGAGCTTCGTGCAGGACCTGCTGGATGATGATGACGACGCCACCATCGTGCGGGCGATCATCCAACTGGGCAAAAGCCTGGGCATGCAAGTGATCG CCGAAGGCGTGGAAACCGCCGAGCAGGAGGCCTATATCATCTCCGAAGGCTGCCATGAAGGTCAGGGTTACCACTACAGCAAACCCTTGCCGGCGCGAGA GCTGGCGGCGTTCTTGAAGCAGTCGGAGCGCAACAACGCCGCAATTCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGGTAAACCGATACTGAATATTTCCCGCGTTTAACCCTTTACACAAAATGCAAATCTTTCGCATTATGTCGCAGTTTTTGCGCTCCCCCGCGCGCCCC CTCAACAACCGAAGCAGGATGTTCGCCATGATTCGTATGCCCCTGGCCACCGCCAGTCTGCTGGCCATTGCCATTTCTCTCGCCGGTTGCGGCGAAGGTA AAGACAAGGCCGCAGCGCCCCAGGCGCCGACCCCGGCTGCCAGCACTACCGCTCCAGCGGCTGCCACGCCTGCCGGCCAGGTCGACGAAGCCGCCGCCAA GGCCGTGGTCGCGCATTACGCTGACATGGTGTTCGCGGTCTACAGCGATGCCGAGTCCACCGCGAAAACCCTGCAAACCGCGATCGACGCATTCCTTGCC AAGCCGAACGACGAAACCCTGAAAGCCGCGCGCACCGCCTGGATCGCCGCTCGCGTTCCTTACCTGCAGAGCGAAGTGTTCCGCTTCGGCAACACCATCA
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVALSVAQIVFDAYKTRQAVAGDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRMASIGHPNETMLAEK SRALQQSSSRWLTDLILGQERTFTTALVGKGPYSEYYGDLSITLDTATYGKGFIVSSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTSINPD RPSEHKIPQLKGHERNELGLWINTANQLLESIERNTHLRHEAESSLLRMAQYDFLTGLPNRQKLQEQLDKILIDAGRRQRRVAVLCVGLDDFKSVNEQFT YQAGDKLLLALADRLRAHSGRLGALARLGGDQFALVQADIDQPYEAAELAQSILDDLEAEFALDHEGIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KTRSRNRYQFYIASVDSEMRRRRELEKDLRDALSRDQFHLVYQPQISYRDHHVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIPIGEWVLDQACRQL REWHDLGFTELRMAVNLSTVQLHHTELPRVVNNLMQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEGCHEGQGYHYSKPLPARELAAFLKQSERNNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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