Pseudomonas sp. 2-92, U367_RS0128115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCCAAGGCACCCTGCTTGTCGTGCAGCAAGGCACGCTGGCGGTGTTTGCCAACAGCCAGGCGGCCAGCGCACGCCAGGTCCTCACGCCCGGCGACCCC ATGGTGTTCAACCGCAGCGGCATTCGCCCGGCGGTCGCCAACGGACTTGATCCCTGGGCCTGGAGCGACGGGGTAATCAGCGCCCACAATATGCGCCTGG ACGACTTTCTCACCGAGCTGGGCCGCTATCGCAACGGCGTGTTGCGCTGCAGTGAGGCAGTGGCCGGGCTGCGGGTGTCGGGGACTTATCAGTTGGACGA CACCGACCAGGTGCTGGGCCTGGTGGCGCAATCGCTCAAGCTCGATGTCACTTACCGCAGCCGCTATTGGGTGACCGTTTCACCGCGCGTGTAATTTTTC AAAAAATAAATGAGGTGAATTCTCATTGCCGCTCGACCTGTAAGGAAAGGCCGATCAACAGGCCGGTTCTGTCCACTTCCTTCAGGAGCATCCCGCGGTC
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| DNA Sequence for Gene |
>U367_RS0128115
ATGCAAGCGTTCCCCTCCCCACGTTCCCCCCTCAAGCGCGCGGTCCAGGCCGCCTTGCTTGGCGTCTGCCTGAGCGGCGCCCTGCCACTGGCCGTGATGG CCGAAACACCGGCCAACGACACCCAGGCCCGCGACTGGAATATCGCCTCCGGCGCCCTGGCCAGTGCGCTGGACCAGTTCGCCCGTCAGGCCGGCATCAG CCTGTCGTACGACGCCACCAGCGTCGCCGGCAAAACCAGCTCGGGCCTCAATGGACGCTTTGATCCTCAGCAAGCGCTCGAACAACTGCTGCGCGGCCAG GGCCTGCAAGCCCAACGCCAAGGCAACAGCACCTGGATGCTGCTGCCGCAAGCAGGCGATGCCAGCACACTGAACCTGGGCGCCACATTGATCAACGGCG AACGTTTGGGCGCCACCACCGACGGCACCGGTTCCTACACTACCGGCGCGGTCACCATCGGCAAGGGCGAACACAGCCTGCGGGAAACCCCGCAATCGGT GAGTGTGATGACCCGCCAATTCATGGACGACCAGAACGTCACCACCATCGATGACGTGATGGAACGCACGCCCGGCATCACCTCCTACGAATCACCCATG GGCGGCAAGTATTTCTACTCCCGAGGCTTCAAAATGCTCGGCCAATACCAATACGACGGCGTGCCCCTGGACATGGGCAAGGACTACGTCCAGGCCGACA GTTTCAGTGCGAACATGGCGATCTACGACCGTGTGGAAGTGCTCAAGGGCGCCGCCGGCATGCTCAAGGGGGCCGGCACCGCCAGCGGTGCGGTGAACTT CGTGCGCAAGCGGCCCCAGGCCAAGCCCACCACCAGCCTGTCGTTGTCCGCCGGCACCTGGGACAACTACCGCGCCGATGTCGACACCGGCGGCCCGCTG AATGACAGCGGCACCCTGCGTGGTCGTGCGGCGGTGAGCCAACAGACTCGCGGCTCCTACATGGACATCGCCAAGCGCCAGGACCAGGCGTTCTACGGCG CGCTGGATTTCGACATCACGCCAGACACAACCCTGGGTGTCGGCGCGAGCTACGAAGATGTCGACGCCACCCCGTGCTGGGGCGGGCTGCCGCGCTACGC CGACGGCAAAAGCGCCAACCTGAGCCGCTCGACCTGCCTCGGCCAATCCTGGAACGACTGGCAAAGCCGGCGCACCACGTTCTTCGCTGACGTGACCCAC CACTTCAACGATGATTGGAAACTCAAGGTCGCGGCGGTACACAGCCGCAACCTGCAAGACACAAAATATGCCGCCAGCGAAGGCACCATCAACTACGGTG ACCCGGCGCCCACGGCCAACTCCTATGCGGCGTTGATGGACTACGACCACAAGGACTACGGCCTCGACGCCTATATAGACGGCAAGTTCGAAGCCTTCGG CCTGCAACACGAACTGATCCTCGGCGCCAACGGCAGCCGTGGCACCCAGGACGACGTATACGCGATCCAGAACCTGCCCAAGCGCCAGAGCATCTACCAG CCCGACCACCACTTCCCGGAACCGGCCGACAACACCTTCTGGCCGAACATGTACCGTGGCGGCACGGTCAAGGAAACCGCCACGCAATACGGCACCTACG CCACCTTGCGCCTGCGCCTGGCCGAGCCCTTGATGTTTATCGTCGGCAGCCGTGTGAGCTGGTACGAAAACCGTCGCCAGTCCAACAACCTGGCCTGGGG CGAATGGGCTGTGCAGGACGCACGAACCAAGGAAACCGGCGAAGTCACGCCGTTTGCCGCACTGATCTACGACCTTGACGAGCACCTGTCGGTGTACGCC AGCTACGCGGATATCTTCCAGCCGCAAAGTTCCTACGCCACCGCCGACGGCGCAGCGCTCAAGCCCAAGATCGGTGACAACTATGAGCTGGGCATCAAGG GCGAATGGTTCGACGGTCGCCTCAACAGCTCCCTGGCCCTGTTCCGCTCCATCGAGAAAAATGGTGCCGAAACCGACTACGCCAGTTTCTGCCCGACCTC CGCCGATGGCTATTGCTACACCGACAAAGGCAAGGTGCGCGCCCAGGGCGTAGAGGCCGAAATCAGCGGTGAAGTGCTCGAGCGCCTGCAGGTATTCGGC GGCTACACCTACACCCAGACCAAGTCCCTGAACAACATCGACACCCGTAAAGAAGGTGGCGTATCCAACACCTACGTGCCTCGGCACATGCTACGGCTGT GGGGTGACTATCACCTCGACGGTGCGTTGTCGAAATGGAGCGTAGGCACCGGAGTCAATGCGCAAAGCAGCAACTACCGCGTGCAGGGCATCAAGCTCGA ACAGGCCGGTTATGCGACCTGGAACGCCCGCGTGGCGTACCGTATCGACGACACTTGGACCGTCGCACTCAACGGAAATAACTTGTTTGATAAAAGCTAC TTCAACACCGTCGGCACAGCCTCCTGGGGCAACTTCTACGGTGAACCGCGTAATTTCACCGTGAGTTTGAAAGGCGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGGCGAAAGCCCCGCAAGCAGGGCGCTTAGTGCGCCCTGCAACTCCCTCTTTGTCCCCCTTTCCTACGTCGCTTCGAAAAAGGTTTTTCCATTAAGCA GGAAAAATCTCACATTTGTTCCTACACTCAAAATCAGCCCTGATGACCGAGTGTCCAGACAAGGAACGTCAATAAAATGCCGAATAAAAGACTCATTAAC CTGTCTAGCATGCCACCTCCGCACCATAGTCAATTCATTGACTGAGCACAGTAAGGGAACACTCCTTTAGTCACTACCCCCGCAAACCCCCTTCAAATGG ATAGCTACATTTTGGATGGAAAGTTGCGTATTACCCAGAGTAGCCAGTTTGACCAGCGCTCTAAAGCAGCCTGCTGCTTTATTGAACAAACAATCAAACA GCGAAGCCTGGAGTGCAATGAGGGATGTTTTTATGCGAGAGAAGTCGTCCGTCGACAGTTTGTTTTTAACGCGCGCCGGGTTTGTTGAGTTTTTTGTTGT
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| Amino Acid Sequence |
>TonB-dependent receptor
MQAFPSPRSPLKRAVQAALLGVCLSGALPLAVMAETPANDTQARDWNIASGALASALDQFARQAGISLSYDATSVAGKTSSGLNGRFDPQQALEQLLRGQ GLQAQRQGNSTWMLLPQAGDASTLNLGATLINGERLGATTDGTGSYTTGAVTIGKGEHSLRETPQSVSVMTRQFMDDQNVTTIDDVMERTPGITSYESPM GGKYFYSRGFKMLGQYQYDGVPLDMGKDYVQADSFSANMAIYDRVEVLKGAAGMLKGAGTASGAVNFVRKRPQAKPTTSLSLSAGTWDNYRADVDTGGPL NDSGTLRGRAAVSQQTRGSYMDIAKRQDQAFYGALDFDITPDTTLGVGASYEDVDATPCWGGLPRYADGKSANLSRSTCLGQSWNDWQSRRTTFFADVTH HFNDDWKLKVAAVHSRNLQDTKYAASEGTINYGDPAPTANSYAALMDYDHKDYGLDAYIDGKFEAFGLQHELILGANGSRGTQDDVYAIQNLPKRQSIYQ PDHHFPEPADNTFWPNMYRGGTVKETATQYGTYATLRLRLAEPLMFIVGSRVSWYENRRQSNNLAWGEWAVQDARTKETGEVTPFAALIYDLDEHLSVYA SYADIFQPQSSYATADGAALKPKIGDNYELGIKGEWFDGRLNSSLALFRSIEKNGAETDYASFCPTSADGYCYTDKGKVRAQGVEAEISGEVLERLQVFG GYTYTQTKSLNNIDTRKEGGVSNTYVPRHMLRLWGDYHLDGALSKWSVGTGVNAQSSNYRVQGIKLEQAGYATWNARVAYRIDDTWTVALNGNNLFDKSY FNTVGTASWGNFYGEPRNFTVSLKGDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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