Pseudomonas sp. 2-92, U367_RS0107625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold5.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGGGCAGCGCTTCCTGGAGATCTGGTCCGGCTTGCCGGTGCTGTACCTGCTGATCATCCTCGCCAGTTTCGTGCAGCCCAACTTCTGGTGGCTGCTC GGCATCATGCTGCTGTTTTCGTGGATGAGCCTGGTGGACGTAGTGCGCGCCGAGTTCCTGCGCGGGCGCAACCTGGAATACGTGCGTGCCGCCAGGGCCT TGGGCATGCAGAATGGCGCGATCATGTTCCGGCATATCCTGCCCAACGCGATGGTGTCGACCATGACCTTCATGCCGTTCATTCTCACCGGCGCCATCGG CACCCTCACCGCCCTGGACTTCCTCGGTTTTGGCTTGCCGGCCGGTTCGCCGTCGCTGGGTGAACTGGTGGCCCAAGGCAAATCCAACCTGCAAGCGCCG TGGCTGGGCATGAGTGCCTTTGCCGTGCTGGCGATCATGTTGAGTTTGCTGGTGTTTATCGGCGAGTCCGCTCGCGATGCCTTCGACCCGAGGAAATGAG
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| DNA Sequence for Gene |
>U367_RS0107625
ATGAATCAGGACAATCTGATCGAAATCCGCGACCTCTCCGTCGAGTTCGTCACGGGCGACCATCACCACCGCGTGGTGAATAACGTCAGCTTCGACATCA AACGTGGCGAGACCATCGCTCTGGTGGGTGAAAGCGGCTCAGGCAAATCGGTGACCGCCCACTCGATCCTGCGCCTGCTGCCCTACCCACTGGCGCGGCA CCCCTCCGGCACCATCAACTATGCCGGGCAGGACCTGCTCACGCTGAAAGAAAAAACCATCCGCCACATTCGCGGCAACCGCATTGCGATGATCTTCCAG GAGCCGATGACCTCGTTGAACCCGCTGCACTCCATCGAGAAGCAGATCAACGAAGTACTCGGCCTGCACAAGGGGTTGCAAGGCAAGGTCGCCACCCAGC GGACCCTGGAGTTGCTGGACCTGGTGGGCATTCCCGAACCGCACAAACGCCTCAAGGCCCTTCCCCATGAGCTGTCCGGAGGCCAGCGCCAACGGGTGAT GATCGCCATGGCCCTGGCGAATGAGCCGGAGTTGCTGATCGCCGATGAGCCGACCACGGCCCTCGATGTGACCGTACAGTTGAAGATCCTCGAACTACTC AAGGAATTGCAGGCGCGGCTGGGCATGGCCCTGCTGCTGATCAGCCATGACTTGAACCTGGTGCGGCGCATCGCCCACCGCGTGTGCGTGATGCAAAAGG GTTGCATCGTCGAGCAGGCCGACTGTGAAACGCTGTTCCAATCGCCCCAGCATCCGTATACCCAGGAACTGCTTGCAGCGGAGCCCAGCGGCGGACCGGC CGGCAACGAAGTCGGCCCTCCGTTGCTGGAAGTCGATGACCTGAAAGTGTGGTTCCCGATCAAGAAGGGCTTTTTGCGCAATACCGTCGATTACGTCAAG GCGGTGGACGGCATCAACTTCAGCCTGCCCCAGGGGCAGACCCTGGGAATCGTTGGCGAAAGCGGCTCGGGCAAATCGACCCTGGGCCTGGCGATTCTGC GGTTGATCGCGAGCAAGGGCGGCATTCGTTTTGAAGGGCAGCAATTGGATAAGCTCAGCCAGCAACAGGTGCGTCCGTTGCGTCGGGAGATGCAGGTGGT GTTCCAGGACCCGTTTGGCAGCTTGAGCCCGCGGATGTGTGTCAGTGAGATCGTTGGCGAGGGGTTGCGTATCCATAAGATGGGGACGCCATTGGAGCAG GAAGCGGCGATTATTGCGGCGCTCAAGGAAGTTGGGTTGGATCCGGAGTCGCGGCATCGGTACCCCCATGAGTTCTCGGGTGGGCAGCGTCAGCGCATTG CCATTGCCCGGGCGTTGGTGCTCAAGCCGCGCCTGATTTTGCTGGATGAGCCGACATCGGCGCTGGATCGCACAGTGCAGCGGCAAGTGGTGGAGTTGTT GCGCAGTTTGCAGGCCAAGTACAACTTGACCTATCTGTTTATCAGCCATGATTTGGCGGTGGTCAAGGCGTTGAGCCATCAGTTGATGGTGGTGAAACAT GGCCAGGTGGTGGAACAGGGGGATGCGGCGGGGATTTTTGCCGCGCCGCAGCATGGGTATACGCGGCAGTTGTTGGAGGCGGCGTTTTTGGTGCCTGGGG TTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTTTTGCTGGTAGCGTGATGGCTGCTAAACGCGGTCCTGTAGGAGCCGGCTTGCTGGCGATGGTCGTTAACGATGACGCGGGGAACCAGACAGAATGCGG CGTTCTCACGTTTTTCGCCGGCAAGGACCGCGTATCCACGATGCGAAGCGAGTCGCTCTTGATCTTGATTTTGATCTTAGGCGCCCCGTCAAACACGCTG GCCGAACGCAGGCTTGAATCCGTGGGTAACCCGGCAGGACGCCGGGTTAGCCGCGCTGGGCCAAGGATGGCCCATCGCGGCGGCCCACGGATTCAAGCCG GAGTGAGGGCACACCGAGCCTAAGCGAGGTGCCGAGTGTTGGGGCAAGAGCCCTTTTGGTTACTTTTGGGGCTCTTTTCCAAAAGTGACCCGCCGTAAGG GCGGAACCAATACCAGCCATCACCGCAGCAACGGATATGTACACCACCACCAACCACCAACCACCCCAACGGAACTTTGCCAAGAAATAACCGCCTGAAT
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| Amino Acid Sequence |
>microcin ABC transporter ATP-binding protein
MNQDNLIEIRDLSVEFVTGDHHHRVVNNVSFDIKRGETIALVGESGSGKSVTAHSILRLLPYPLARHPSGTINYAGQDLLTLKEKTIRHIRGNRIAMIFQ EPMTSLNPLHSIEKQINEVLGLHKGLQGKVATQRTLELLDLVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KELQARLGMALLLISHDLNLVRRIAHRVCVMQKGCIVEQADCETLFQSPQHPYTQELLAAEPSGGPAGNEVGPPLLEVDDLKVWFPIKKGFLRNTVDYVK AVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLIASKGGIRFEGQQLDKLSQQQVRPLRREMQVVFQDPFGSLSPRMCVSEIVGEGLRIHKMGTPLEQ EAAIIAALKEVGLDPESRHRYPHEFSGGQRQRIAIARALVLKPRLILLDEPTSALDRTVQRQVVELLRSLQAKYNLTYLFISHDLAVVKALSHQLMVVKH GQVVEQGDAAGIFAAPQHGYTRQLLEAAFLVPGV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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