Pseudomonas sp. 2-92, U367_RS0105595 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 2-92(2010) strain 2-92 scaffold5.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCCTCGCACCGGACAAACGTGGCGGCAAGGTCTACGCCTTGCTAAGGGAAACCCTTAGAAAAACCCGCAAGGTCGCCCTGGCCAATGTGGTGCTGCACAC CAAGCAGCACCTGGCGGCGTTGATGCCCCTGGACTCGGCGCTGGTGCTGGTGATGCTGCGCTGGCCCGCCGAGGTGCGAAGCCTGGACGAACTGGAGCTG GGCAGTGACGTGACCAAACCGAGCCTGGCCAAGGGCGAATTGGACATGGCCAAGCGCCTGGTGGACGACATGAGCGCCGACTGGCAGCCGGACGACTACC GCGACAGCTTCCAGGAAAAAATCATGGCGCTGGTCGCCAAGAAGGCCAAGGCCGGCAAGATCGAGGATGTGGAGACCAGAGACAGCGAAGAGCGCAAGTC CGCCGATGTGATCGACCTGACGGAACTGCTCAAGCGCAGCCTGGCCGGCAAACCGGCGAAAAAGCCTGCCACGAAAAAATCCACCAAGGCCTCCTGAGTC
DNA Sequence for Gene
>U367_RS0105595 |ligD
ATGCCCAAGCCCCTCAGCGACTACAACCGCAAGCGTGATTTCGGCATTACCGGCGAACCCGCAGGCAACTCGCCTGCACGCACGCGCAAAGCCTCGGCGC TGTCCTTCGTGATCCAGAAGCATGACGCACGCAACCTGCACTATGACTTTCGTCTGGAACTCGACGGCGTGCTGCTCAGTTGGGCCGTGCCCAAAGGGCC GAGCCTGGATCCCAGTCAGAAGCGTCTGGCCGTTCACGTCGAAGATCATCCCCTGAGCTACGGCGGCTTTGAAGGCAGCATTCCCGCCGGTCAATACGGC GCCGGTGACGTCATCGTGTGGGACCGTGGCATTTGGCAGCCCCATGACGAACCCCGCAAGGCCTACGCGGCCGGCAAGCTCAAATTCACCCTGGTAGGCG AGAAACTCTCCGGCGACTGGGCGCTGGTGCGTACCCGCTTGAAAGGCAGCGGCGACAAGGAACAATGGCTGCTGATCAAGGAAAAGGACCAGCAGGCGCG TGCGGCCGACGACTACGATATCGTCCAGGCCCAGCCGAACAGTGTGCTCAGCGATGCCTCGGTGGGTAAACCCAAGGCTCGAGCCAAAGTCAGAAAAGCC GCCCTCCCCGAGCAATTCAATCCGCAATTGGCCACCCTGGTGGATCGCGCCCCCGAAGGTGATTGGCAATACGAGATCAAATTCGACGGCTACCGCATGC TCGCTCGCATTCACGAGGGTGAAGTGCGACTGTTTACCCGCAACGGACACGACTGGACCGACCGTCTGCCCCGCCAGGTCAAGGCCTTGCAGGCTCTGAA GCTCAAGGACAGTTGGCTGGATGGCGAGGTGGTCAGCCTCAATGGCGATGGCCTGCCGGACTTCCAGGCGCTGCAAAATGCGTTTGATATCGGCCGCAGT TTGGACATCGTTTACTACCTGTTCGACGCGCCCTTTCTCAATGGCCAGGACCAGCGCCAGACGCCGGTGGAGGATCGCCGCGCCGCCCTCAAAGTCGCGC TGGCCGCTAGCCGCAGCCAATTGCTGCGGTTTTCCGAGGCATTTACCGCGCATCATCGCGACATCTTTGAAAGCGCCTGCGACTTGGCCCTCGAAGGCGT GATCGGCAAGCGCCTGGGCAGTCCGTACGTATCCAGTCGCAATGCCGACTGGATCAAACTCAAATGCCGGTTGCGCCAGGAGTTTGTGATTGTCGGTTAT ACCCGCCCCCAAGGCTCACGCACGGGGTTCGGCGCGTTATTGCTGGCGGTAAATGATGAGACTGGCCTGGTGTATGCAGGCCGCGTAGGCACGGGTTTTG ATCAAGCGTCGCTCAAGACTATTTATGCGCAACTCACATCGTTGGAGCGCAAGACATCGCCGCTTGAGAAACCGCTGACCAGCACCCAAGCACGTGGCGT GCATTGGGTAGCGCCCACGTTGGTCGGTGAGGTGCAGTTTGCCGAGTGGACACGCGAGGGCGTGGTCCGCCAAGCCGCGTTCGTCGGGCTGCGCACCGAC AAACCCGCAGCGCAGATCGTGCATGAACAACCGCGAACGGCCAGATCCATGAAACCCGCCAAAAAGACCCGCGGTGAAGTCAACATCACCCATCCAGACC GTGTGATCGACAAACAAAGTGGTACACAAAAACAGCAACTGGCGCAGTTCTACGACAGCATCAGCCAGTGGATTCTGCCCTTTTTACGCCACCGGCCGGT GTCCCTGCTGAGAGCGCCGGAGGGTATCGAGGGCGAGCAATTCTTCCAGAAACACTCGGAGCGCCTGGCCATCCTCAACATCAAGCAACTGGAACAGGCA CTTGATCCCGGCCATGCGCGGCTGATGGAAATCGACAGCGTCGGCGCCCTGATAGGCTCGGTGCAAATGGGCGGCGTAGAGTTTCATACCTGGGGCGCCA CCTCGGACAAGATCGAAACCCCGGACCTGTTTGTGCTCGATCTCGACCCGGACCCAGCGTTGCCTTGGAAAACCATGCTCGAAGCCGCGCAACTGACCCT GTCGGTACTGGATGAGTTGGGGCTGCAAGCATTCGTCAAGACCAGCGGCGGCAAAGGCCTGCACCTGATCGTGCCGTTGGCGCGCCGAGACAATTGGGAC ACCGTAAAAGCGTTCGCCAAGGCCATCGCCCAGTTCATGACCGAGCAATTGCCGGAACGCTTTACCGCGACATCGGGGCCCAAGAACCGGGTCGGCAAGA TCTTTATCGATTACCTGCGCAATGCACGGGGAGCCAGCACCGTAGCCGCGTATTCCGTGCGAGCACGGCCAGGCTTGCCGGTGTCGGTGCCGATCAGTCG TGAGGAGTTGAAGGGGTTACGCGGTGCGCAGCAATGGACAGTCGCCAATCTGCAGCAGCGCTTGGACGCTTTGAAAACGGATCCCTGGGCGGGGTATGCC AATCGACAGAAGATCAGCAAGAAGATGTGGGACAAACTGGGCGCCCATCCACCGAAGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AAGGCGCCCGCACAGCGAAACTCAGATCAGCAGAAAAATCGCCGCCAACCCAGCAAAGATCGCCCATTTTTCCAGGTAGTAGCGCGTACGATTGCGCTTT TTCAGCTCTTTACCACGCAGACGAATCTTGTACAGGCGCGTGAACGCGCGGTTGAGCCCACCGGTCTTGTCACCGTCATCGTTGGGCGAACCTGCAGCCG CCATCACGTTACGGCTGAACCAGCGGTTGAACGCAGCGGCCCAGCGGTACTTCATCGGGCGCTCGACGTCGCAGAACAGAATGATGCGGTTCTGCTGCGT GGTGTTTTCGGCGTAGTGGATGTAGGTCTCGTCAAACATCACCGGCTCACCGTCACGCCAGTAGTAGTTTTCGCCGTCCACGTTGATGTAGCAGCCGGGG TCATTCGGGGTATCCAGGCCCAGGTGATAGCGGTACGAACCGGCATACGGATCACGATGGCGTACCAGTTTGGAACCGGGTGGCAGTTCGGCGAACATCG
Amino Acid Sequence
>ATP-dependent DNA ligase
MPKPLSDYNRKRDFGITGEPAGNSPARTRKASALSFVIQKHDARNLHYDFRLELDGVLLSWAVPKGPSLDPSQKRLAVHVEDHPLSYGGFEGSIPAGQYG AGDVIVWDRGIWQPHDEPRKAYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDQQARAADDYDIVQAQPNSVLSDASVGKPKARAKVRKA ALPEQFNPQLATLVDRAPEGDWQYEIKFDGYRMLARIHEGEVRLFTRNGHDWTDRLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRS LDIVYYLFDAPFLNGQDQRQTPVEDRRAALKVALAASRSQLLRFSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSSRNADWIKLKCRLRQEFVIVGY TRPQGSRTGFGALLLAVNDETGLVYAGRVGTGFDQASLKTIYAQLTSLERKTSPLEKPLTSTQARGVHWVAPTLVGEVQFAEWTREGVVRQAAFVGLRTD KPAAQIVHEQPRTARSMKPAKKTRGEVNITHPDRVIDKQSGTQKQQLAQFYDSISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAILNIKQLEQA LDPGHARLMEIDSVGALIGSVQMGGVEFHTWGATSDKIETPDLFVLDLDPDPALPWKTMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWD TVKAFAKAIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPISREELKGLRGAQQWTVANLQQRLDALKTDPWAGYA NRQKISKKMWDKLGAHPPK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site