Pseudomonas sp. 2-92, U367_RS0101320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold4.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCCGCGCCGTTACATTCAACCGTCCCATGTGGTGCGCATTGCACCGATGATCTACGGGGGGTCGTTCCGCCGCGACTCACAACTGGCCGCCGAACACG CGAGCAAAGTGCGTTCGGCTGGCAAGCTCGGTTATTACTGGCAGCTATTCGCCGGGCTGGGCTGGACCAGCATCCACTGGCTGCACAAGATCCGCCAACC CACCCTGGTGCTGGCGGGGGACGACGACCCGCTGATCCCGCTGATCAACATGCGCATGCTGGCCTGGCGCATTCCCAACGCACAGTTGCACATCATCGAT GACGGCCACCTGTTCCTGATCACCCGGGCGGAGGCCGTGGCGCCGATCATCATGAAGTTTCTAGAAGAGGAGCGCATGCGCGCGGTGATCCATCCGCGAC CGGCCGTGTAAGGACCACACCGCCGCGCAACTTGCCAAGAACCGGCTATGGTTCTGAATTGGCGTGCCTGTTTGATGGCTTGACGAAGGAGTGTTGGCTC
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| DNA Sequence for Gene |
>U367_RS0101320
ATGCGAGAAAGACCCGTGACGAACCCGGCGCCAACCCCTGCCGCGTTCATCAATGCGCAAAATGCGATCACCGGCCTGCGCGGTCGAGACCTGCTGTCGA CCCTGCGCAGCGTGGCCGCCCATGGCTTGCGCAACCCGGTGCATACCGTTCGGCATGCCTGGGCGTTGAGCGGTCAACTGGGTCGCGTGCTGCTCGGTGA AACCGTGCACGAACCCAACCCCAACGACGGCCGCTTCACCGACCCCACCTGGAAGCTCAACCCACTGTACCGGCGCAGCCTGCAAGCCTATCTGAGCTGG CAGAAGCAGACCCGTCACTGGATCGATGACAGCAACCTGAGCGCCGATGACCGCGCCCGTGCGCATTTTGCTTTCTCGTTGATCAACGATGCGGTCTCCC CTTCCAACACCCTGCTCAACCCGCTGGCGATCAAGGAGCTGCTCAACTCCGGCGGCAACAGCGTGGTGCGCGGTGTGACCAACCTGTTCGAAGACCTGCT GCACAACAATGGCCTGCCGCGCCAGGTGAGCAAGCACGCCTTCGAAGTCGGCAAGACGGTCGCCACCACCCCCGGCTCCGTGGTGTTTCGCAATGAGCTG CTGGAGCTGATCCAGTACAAGCCCATGAGCGAAAAGCAATACGCCAAGCCGCTGCTGATCGTGCCGCCGCAAATCAACAAGTACTACATTTTCGACTTGA GCCCCGCTAATAGCTTCGTGCAGTACGCCCTGAAAAACGGCCTGCAGACCTTCATGGTCAGTTGGCGCAACCCGGATGTGCGGCATCGCGAATGGGGCTT GTCCACCTACGTCGCTGCGTTGGAGGAAGCACTCAACGTGTGCCGCGCGATCACCGGTGCTCGTGAGGTCAACCTGATGGGCGCTTGCGCCGGCGGCCTG ACCATCGCCGCGCTGCAAGGCCACCTGCAAGCCAAGCGCCAGCTGCGCCGCATCTCCAGCGCCAGTTACCTGGTGAGCCTGCTGGACAGCCAGATCGACA GCCCCGCCACCCTGTTCGCCGACGAGCAGACCCTGGAAGCCGCCAAGCGCCGGTCCTATCAACAAGGCGTGCTGGACGGTCGCGACATGGCCAAGGTGTT CGCGTGGATGCGGCCCAATGACCTGATCTGGAACTACTGGATCAACAACTACCTGCTGGGCAAGGAACCGCCGGCCTTCGACATCCTGTACTGGAACAAC GACAACACGCGACTGCCGGCAGCGCTGCATGGCGACCTGCTGGACTTCTTCAAGCACAACCCGCTGAGCCATCCCGGTGGCCTGGAAGTGTGCGGCACAC CGATCGATTTGCAGAAGGTCACGGTAGACAGCTTCAGCGTGGCGGGCATCAACGACCACATCACGCCGTGGGATGCGGTGTATCGCTCCACCCAATTGCT GGGCGGCGAACGGCGCTTCGTGCTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAGGCTAACTACGTCGAAAACCCCAAG CTGAGCAGCGACCCGCGCGCCTGGTACTACGACGCCAATCACGTCGACGGCAGTTGGTGGCCGCTGTGGCTGGCGTGGATCCAGCAGCGCTCGGGCGTGC AACGGGAAACCCTTACTGCCCTGGGCAACCAGAACTACCCACCGATGGAAGCGGCACCCGGCACCTACGTGCGCGTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCAACGATCACATTAAGAAGACTGGATGAAGACCCGCGACCGTATCCTTGAATGTGCCCTGCAGTTGTTCAACCAGAAGGGCGAGCCGAACGTGTCGA CCATGGAGGTGGCCAATGAAATGGGGATCAGCCCCGGCAACCTCTACTACCACTTTCATGGCAAGGAGCCGCTGGTGCTCGGGTTGTTCGAGCGTTTCCA GAATGAGCTGGCGCCCCTGCTCGACCCACCAGCGGACGCGCAACTGGAAGCCGAGGATTACTGGCTGTTCCTGCACCTGATCGTCGAGCGCATGGCGCAT TACCGGTTCTTGTTCCAGGACTTATCGAACCTGGCGGGACGTTTGCCGAAGCTGGCCAAGGGCATTCGCAACTTGCTGACGGCGCTCAAGCGGACACTGG CGTCTTTGCTGGCGCGACTGAAGGCGGCGGGTCAGTTGGCCAGCAGCACCCAGGCCCTGGGGCAACTGGTGGAGCAGATCACCATGACGCTGCTGTTTTC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRERPVTNPAPTPAAFINAQNAITGLRGRDLLSTLRSVAAHGLRNPVHTVRHAWALSGQLGRVLLGETVHEPNPNDGRFTDPTWKLNPLYRRSLQAYLSW QKQTRHWIDDSNLSADDRARAHFAFSLINDAVSPSNTLLNPLAIKELLNSGGNSVVRGVTNLFEDLLHNNGLPRQVSKHAFEVGKTVATTPGSVVFRNEL LELIQYKPMSEKQYAKPLLIVPPQINKYYIFDLSPANSFVQYALKNGLQTFMVSWRNPDVRHREWGLSTYVAALEEALNVCRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRISSASYLVSLLDSQIDSPATLFADEQTLEAAKRRSYQQGVLDGRDMAKVFAWMRPNDLIWNYWINNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPIDLQKVTVDSFSVAGINDHITPWDAVYRSTQLLGGERRFVLSNSGHIQSILNPPGNPKANYVENPK LSSDPRAWYYDANHVDGSWWPLWLAWIQQRSGVQRETLTALGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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