Pseudomonas sp. 2-92, U367_RS0100145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold4.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGCCCGTGCCCAGTCGGCCCTGGCCGAAGCCCAGGTGACGGTGGATTCCGCCCAGCTCAACCTCGACCGCTCGGTGATCCGCAGCCCCGTGGACGGTT ACGTCAACGACCGTGCGCCGCGCACCCAGGAATTCGTCACCGCCGGGCGTCCGGTGTTGTCGGTGGTCGACAGCAATTCTTTCCATATCGATGGTTATTT CGAAGAGACCAAGCTCGACGGCATCCACGTCGGCATGGCGGTGGACATCCGTGTGATCGGTGACAACGCCCGCCTGCGCGGCCATGTGCAAAGCATCGTT GCCGGTATCGAAGACCGCGACCGCAGCAGTGGCTCCAACCTGCTGCCCAACGTCAACCCGGCGTTCAGCTGGGTGCGCCTGGCCCAGCGGATTCCGGTGC GCATCGCCTTTGATGATGTGCCGGCGGACTTCCGCATGATCGCCGGGCGTACGGCCACCGTCTCGATCATCGGCGATAAGGTTAAAGACGGAGACCAGCC
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| DNA Sequence for Gene |
>U367_RS0100145
ATGAAGCAGCTGTTGGCCACCGCCGCGCTGGGCGTGTTGCTGTCGGCCTGCCAGGCGGTGGGCCCGGATTACTCGCTGCCGGATAAAGCCGCGGTCAATC GTGGCGACCTGCAAGGGCAAATCGCCGGTGAGGGCAACAACGTGGTGTCGACGCCGGTACCGGCCGACTGGTGGAAGTTGTACAAAGACCCCCGCCTGGA TGAGCTGGTGCGCCAGGCCATGGCGTCGAACACTGACTTGCGCGTGGCGGCTGCGAACTTGCAGCGTGCGCGCTATCAGACCCAACAAGCTGAATCCGCA GGCGGCTGGAGCCTCGGCGCCAAGGCGGAGGCCCAGCGCCTGCAAGAGTCCGGCGAAGCGTTTTTGCTGGCCGACAAAGTCCCGGTGGGTAACATCGGCA GCGTGGGGATTACCACCTCGTATCAGTTCGATCTGTTCGGCACCTTGCAACGTGGCATCGAAAGCGCCCAGGCCACTGCCGACGCAGCCCAGGCCGCTGC CGATATCGCGCGCATCACCCTGGTGGCCGATGTCGTGCGCTCCTACACCCAAGTGTGTGCAGCGAACGAAGAATTGGCGATCGCCAACGAGTCCCTAGAC CTGCAAGCCCAAAGCACCCAGTTGACCCAGCGCTTGCGCGACGCCGGGCGCGGTGATGAAACCCAGGTGACGCGCTCGCAAACCCAATACAAATCCTTGC GTGCCGATATGCCGCGCTACGAAGCGGCGCGCCAGGCCGGTTTGTTCCGCCTGTCGATGTTGCTGGCCAAGCCGGTGGACCAACTGCCCGGGGGCGCCGG CACCTGCGCCGAATTGCCCCATATCGCCCAGCTGTTGCCGGTAGGCGACGGCGCCACGCTGCTCAAGCGCCGTCCCGATGTGCGCCAGGCCGAACGTCAA CTGGCCGCTGCTACCGCGCGTATCGGCGTGGCCACTGGCGCGCTTTACCCGGATATCAGCATCGGCGCTACGGTGGGCACTGTTGGCCTGCTCGAAAACC TTGGTCAGCCTGCGACCAACCGTTGGGGCTTTGGCCCGATGATCAGTTGGACTGTCCCGACCAACGGCGCCCGCGCGCGCGTCCACGAGGCCGAGGCCGC CACCCAGGGCGCCCTGGCGCATTTTGACGGGGTGGTGCTCAACGCCATCCGTGAAACCCAGACCGGCCTTGCGCAGTACACCGCGCAACTGCAACGCCGC GACGCGTTGGCCGAAGCCGGCGAGTCGGCCAAGGAAGCGGCAGCGCAGACCCATCGCTTCTTCCAGGCCGGCCGCGCATCGTTCCTTGCCGACCTGCAAG CCACCCGCACCTATACCGATGTGCGAGCGCAACTGGCAGCGGCCAACACCCAAGTTGCCATGAGCCAGATCGATCTGTTCCTGGCCTTGGGCGGCGGCTG GGAAAGCGGACGAACGCAACCCGCGCCGGCCAGCAAACCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAATAGCTATGCTTTGACTGGCGGGCTCCCGTGATGGCCCGCCGGTCAACGTTCGCGTTTGCTCATGGGGATTCCAATAATGAAAAACCCTTATGCTC CCGCTTTCTGGTGCGTGTGTTTTGCACTGGTGTTGTTGTCGGCTACCTATTTCTACGGCGTCATGCTGGCTCACCAACTCGACAAGGCGATGGTGTTTCT CGACAGCGCCTGCCTGGTGATCGGCACCCTGTCCATCGGCGTCGTGGCGTGGGCCTCCTACCAGAATCAACGGGTGAAGAAAAAACTCCTCGAACAAGGC AAGACCCGCGTGGCGATCTGGGACACCAAGGTCGCGTTGCGCCGGGTCGAGACCGTGTTCGACCGCTACTTCTGGGGCAGCTACTGGCAACCGGGGCGCA CCTTCCAGGAAGTCATGGGCGACCTGACCGGCACGCCCCTGGAAAAAAGCCTCGAAGTCCTGAAGAAACAGTGCGTGGCCCTCGATCAACAGGTCGCGGA
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| Amino Acid Sequence |
>RND transporter
MKQLLATAALGVLLSACQAVGPDYSLPDKAAVNRGDLQGQIAGEGNNVVSTPVPADWWKLYKDPRLDELVRQAMASNTDLRVAAANLQRARYQTQQAESA GGWSLGAKAEAQRLQESGEAFLLADKVPVGNIGSVGITTSYQFDLFGTLQRGIESAQATADAAQAAADIARITLVADVVRSYTQVCAANEELAIANESLD LQAQSTQLTQRLRDAGRGDETQVTRSQTQYKSLRADMPRYEAARQAGLFRLSMLLAKPVDQLPGGAGTCAELPHIAQLLPVGDGATLLKRRPDVRQAERQ LAAATARIGVATGALYPDISIGATVGTVGLLENLGQPATNRWGFGPMISWTVPTNGARARVHEAEAATQGALAHFDGVVLNAIRETQTGLAQYTAQLQRR DALAEAGESAKEAAAQTHRFFQAGRASFLADLQATRTYTDVRAQLAAANTQVAMSQIDLFLALGGGWESGRTQPAPASKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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