Pseudomonas sp. 2-92, U367_RS0121150
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold3.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTTCCCGCCCGCGTTGCTCGGCCGCCTGGTGACCATCCCTTACTACCCGCTGAGCGACGAGATGCTCAAGGCGATCACCCGCCTGCAACTCAACCGCAT CAAGAAGCGCGTAGAGACCACCCACAAGGTGGCTTTCGATTACGACGACGCGGTGGTCGACCTGATCGTCTCGCGCTGCACCGAGACCGAAAGTGGCGGG CGCATGATCGACACCATTCTGACCAACAGCCTGCTGCCGGACATGAGCCGTGAGTTCCTCACGCGCATGCTCGAAGGCAAGGCGCTGGCGGGTGTGCGTA TCAGCAGCCGGGATAATGAATTGCACTACGACTTCAGCGATTGACCTGTGGAAATGTGATTAAAACTGTGGGAGGGGGCTTGCCCCCGATGGCGTCGGGT CAGCCAGAAATTTCTAACCTGATACACCGCTATCGGGGGCAAGCCCCCTCCCACACTTGATTCGGTTTCTTCAGTTATCAAGTCATTTACGGGTTAACCG
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| DNA Sequence for Gene |
>U367_RS0121150
ATGCTATTCAACCAAGCCTCACGCCTGGCCAAAATCACCAGCCCGCTCGGGCCGGATGTGCTGCTGCTCAATGAAATGGGCGGTGGCGAGGAGCTGGGCA GGCTGTTCAACTACGAGCTGCAACTGACGTCCCTGGACGCCAACATCGATCTCAACCAGTTGCTCGGCAAACCCATGAGCGTGGGCCTGCAACTGGCGGA CGGTGGCGAGCGGCACTTCCACGGCATCGTCGCGCGGTGCAGCCAGAATATCGACCAGGGCCAGTTCGCCAGTTATCAGGTGACGCTGCGCCCATGGTTT TGGCTGCTCAGCCGCACCTCCGACTGTCGGATTTTCCAGAACCTGAGCATCCCGCAGATCATCAAGCAGGTGTTTCGCGACCTGGGGTTTTCCGACTTCG AAGACGCCCTGAGCCGGCCGTACCGCGAGTGGGAATACTGCGTGCAGTACCGCGAGACCAGCTTCGACTTCGTCAGCCGCTTGATGGAGCAGGAAGGTAT TTACTACTTCTTCCGCCATGAGCAGGACCGCCATGTACTGGTGCTGGCCGATGCCTACGGCGCCCACACCACGGTGCCGGGCTACGCCTCGATCCCGTAC TACCCCAAGGACGAGCAGCAACGCGAACGCGACCATATGCACAACTGGCACCTGGCGCACGAAGTGCAACCGGGTTCGCTGGAGCTCAACGACTACGATT TCCAGCGCCCCAGCGCCAGCATCGACGTGCGCTCGGCCATGCCTCGCCCGCACACTGCCGGCGACTATCCGCTGTACGACTACCCCGGCACCTACGTGCA AAGCGAAGACGGCGAGCACTATGCCCGCACCCGCATCGAAGCCCTGCAGACCCTGCATGAGCAGATCGAATTCAGCGGCAACGCCCGTGGCCTGGGTTCG GGGCATTTGTTCAGCCTCACCGGCTTCAGCCGCCAGGACCAGAACCGCGAATACCTGATCGTCGGCTGCCGCTACTACATCGTCCAGGAAAGCCTGGAAA GCGGCGGCGGTTCGGGCTCGGCACAGTTCGAAAGCAGCCTCACCTGCATCGACGCCCAGCAGAGCTTCCGCCCGTTGGCCAGCACCCACCGCCCTATCGT CAAAGGCCCGCAGACCGCGCTGGTGGTCGGCCCCAAAGGCGAGGAAATCTGGACCGACCAGTACGGCCGGGTGAAGGTGCATTTCTATTGGGACCGCCAC GACCAGTCCAACGAAAACAGCTCATGCTGGATTCGTGTCTCGCAATCCTGGGCCGGCAAGAACTGGGGCTCGATGCAGATCCCACGAATCGGCCAGGAAG TGATTGTGAGCTTCCTTGAGGGCGACCCCGACCGGCCAATCATCACCGGACGAGTCTACAACGCCGAACAGACCGTGCCTTACGACCTGCCGGAAAACGC TACCCAGAGCGGCATGAAAAGCCGTTCGAGCAAGGGCGGCACGCCGGCCAACTTCAATGAAATCCGCATGGAGGACAAGAAGGGGTTGGAGCAGTTGTAC ATCCATGCCGAGCGTAATCAGGACATCGTGGTCGAGGTGGATGAAAGCCATTCGGTGGGGCATGACCGCAACAAGAGCATCGGCCACAACGAGACGGTGA CCATCGGCAACAACCGCCTGCGCATCGTCAAGCAGGAAGACATCCTCTCGGTGGGCCAGAGGAAGACCGACAGCATCAGCCAGAGCTATGTCATCGAAGT CGGTGAAAACCTGCGCCTGGTCTGCGGCGAAAGCATCCTGGAGTTGAACGCCAGCGGGCAGATCAACCTCACCGGCGTGCAAATCAGCTTCTATGCCAGC GGCGATGCCGAGTTCAACACCGGCGGCGTGCTGCACCTGAACAACGGCGGCGGCCCCGGCGCCACGCCCGATGGCCAGGGCCAGAAAGCCGCCATCGACG CCAATATCAAAGCCGCGTTCCCCGCGCCTAAAAGCTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAGACCTGTTTGCCATGACGTACCGGATCAACGAATTCCAGTTTCAACTACCCGCCAGTGAGCTGCAGGACGCAACGATCAATATCCTCAAGTTCCCCG AATTGGGCACCACCCTGATCGTCAGCCGCAGCCTGCTCGCCGAGGGTGAAACCCTGCACAGCAACTTCAATGACCAACTCCTGCGCCTGGAAAAACAGGT GCAGGACCTGCGTTATCAGCCGGGCGTGGACGTGCGCTTGGGCGCGGCTCAAGAAGTGGAAGGCATCGAGCTGCGCAGCCAGTTCAGCAAGGGCAATGAC AAGGTGTTCCAGTATCAACTGGCGCTGGTGCTACCGGGTACGCGCAAGATGCTCGCCTTGAGTTACGTGAAGGCCGACAAGCTTGGGGATGCCGAGGCGG CGCACTGGGCGTTGATCAAAAGCTCGCTATCGTTCGACGCTGTTTCCTGATGAGCTGCCTGCATGTCTGACGCGTTATGGGCCGCCCGGATGGGCGATGC
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MLFNQASRLAKITSPLGPDVLLLNEMGGGEELGRLFNYELQLTSLDANIDLNQLLGKPMSVGLQLADGGERHFHGIVARCSQNIDQGQFASYQVTLRPWF WLLSRTSDCRIFQNLSIPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSFDFVSRLMEQEGIYYFFRHEQDRHVLVLADAYGAHTTVPGYASIPY YPKDEQQRERDHMHNWHLAHEVQPGSLELNDYDFQRPSASIDVRSAMPRPHTAGDYPLYDYPGTYVQSEDGEHYARTRIEALQTLHEQIEFSGNARGLGS GHLFSLTGFSRQDQNREYLIVGCRYYIVQESLESGGGSGSAQFESSLTCIDAQQSFRPLASTHRPIVKGPQTALVVGPKGEEIWTDQYGRVKVHFYWDRH DQSNENSSCWIRVSQSWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPENATQSGMKSRSSKGGTPANFNEIRMEDKKGLEQLY IHAERNQDIVVEVDESHSVGHDRNKSIGHNETVTIGNNRLRIVKQEDILSVGQRKTDSISQSYVIEVGENLRLVCGESILELNASGQINLTGVQISFYAS GDAEFNTGGVLHLNNGGGPGATPDGQGQKAAIDANIKAAFPAPKSS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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