Pseudomonas sp. 2-92, U367_RS0121135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold3.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCTTCCCGCGACCGTCTGCAACCGTCCCTGTTGGACCGGTTGACTGACGACGATCCAACCAACCCCAAGGAAAGCGCCGACAAACGCGTGCTGTCCC TGACCCAATTGAAAGCCTCGGTGCTGCGCGACCTGGCGTGGCTGCTCAACACCACGTCGTTGCTCGATGCCGATGCCACGCTGCACACCCCGGCCGGTAC TTCGGTGGTCAACTACGGCCTGCCGGCGCTGGCGGGCAACAGTGTTTCAAGCGTGGATATCAAGGCCTTGGAAGCGTTGATCTACCAGGCCATCGCTACC TTTGAGCCACGCATTCTGCGCCACACCCTGCGCGTAAAAGCCCGCGTCGGCCATGGCGAGATGAACCATAACGCGCTGAGTTTCGAGATCGAAGGCGACC TGTGGGCACAGCCCGTGCCGTTGCGCCTGCTGCTGCAAACCGACCTGGACCTGGAATCCGGCCATGTACGCGTGGTCAACGCTGACCAGCGGAGGCGCCC
|
|
| DNA Sequence for Gene |
>U367_RS0121135
ATGAACCCGCGCCTGCTGGAGCTGTACAACCAGGAACTGCACCACGTGCGCGAAAGCGCCGCCGAGTTCGCCAAGGAATATCCGAAGATCGCCAGTCGGC TGACCCTGTCCGGTATGGACTGCGCCGACCCGTACGTCGAACGTTTGCTCGAAGGCTTTGCCTACCTCACGGCCCGCGTGCAGCTCAAGCTCGACGCCGA GTACCCGACCTTCACCCACAACCTGCTGGAAATCGCCTACCCGCATTACCTGGCACCCACGCCGTCGATGACCGTGGTGCAATTGCAGACCGACCCGGAT GAAGGTTCGCTGGCCAGTGGTTTCCCGCTGCCTCGCGACACCGTATTGCGCGCTGCGCTGGGCCGCGAAACCCAGACCTGCTGCGAGTACCGCACCGCGC ACCCGGTGATGCTGTGGCCGTTGCAGGTGAGCAATGCCGAATACTTCGGCAACCCTGCCGCCGTGTTGGGTCGCCTGGCCGCCAGTGAGCCTAAAGCCAA GGCCGGCCTGCGCCTGACCCTGCGCACCGGCGCCGAATTGCCGTTCAACAGCCTTGACCTGGATAACCTGCCGCTCTACCTCAGCGGTGCCGACGAGCAA CCATTCCGCCTCTACGAACAACTGCTGGGCAATGCCTGCGCGGTGTTTGCACGCAAGCCGGGTGGCGATTGGGTCGAGCGCCTGCCGCAGGATGCACTGC GCTCCCGTGGTTTTGACGATGCCGACGCCGCCATGCCGGTGGTCGCACGCGCGTTCCAGGGCTATCGCCTGTTGCAGGAATACTTCGCCCTGCCCCACCG CTACCTGTTCGTCGAGTTCGCCGAGCTGAGTCGCGCAGTCAAACGCTGCGACGGCCAGGAGCTGGAACTGATTGTGCTGTTCGATCGCCACGAACCGAGC CTGGAAGGCAGCGTTGGCGCGGCGCAGTTCCTGCCGTTCTGCACCCCGGCGATCAACCTGTTCCCGAAGCGCGTAGACCGTATCCACTTGTCCGATCGGG TCAACGAACACCATGTGATCGCCGACCGCACGCGGCCGATGGACTTCGAGATTCACTCGTTGAGCGGCATCACCGGTCACGGTACCGGGCCGGAGCAGCC TTTTTTGCCGTTCTATGCCGTGCGTGATCCATCACGCTACGGCCGCGACCAGGCGTATTACACCGTACGCCGGGAGCCCCGCGTCTTATCCAGCGACCAG CGCCGCAACGGCCCACGCTCCACCTATGTGGGCAGTGAGACCTTTGTCAGCCTGGTGGACAGTCGCCAATCGCCCTACGGCCATGACTTGCGCCAACTCG GCGTGACTGCGCTGTGCACTAACCGCGACTTGCCCCTGTTCATGAGCATCGGCAACGGCAAGACCGACTTCACCCTGGCCGACAGCGCCCCGGTGCTGTC CGTGCGTTGTGTGGCAGGCCCGAGCCGCCCACGCGCCAGCCATGCCCATGACGCCAAGGCCTGGCGCTTGATCAGCCAGTTGTCGCTCAACTACCTGTCC CTGAGCGAACAGGGCCAAGGCGCCGCGGCCTTGCGCGAACTGCTGCGCCTGTACGGCGACAGCAACGACGCCGCCCTGCAGTTGCAGATCGAAGGCCTGC GCGAGGTCAGCAGCAAAGCCGTGACCCGACGTTTGCCGATGCCCGGCCCGATCGTGTTTGGCCGTGGCCTGGAAATCACCTTGGAATTCGATGAAAACGC GTTTCGCGGCACCGGCGTGTTCCTGCTCGGTGCGGTGCTGGAACGCTTCCTGGCACGCTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACC ACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCGGACGTCGTCCGACCCTGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTACCCTGGATGCGATGCATCAGGAGCCCTGGGAATACGATTTCTTCCAGGCACTGCGCCGTATCGAGTGCGAATCGCCAGACCTGCCGCGGCTGGGCCA TTCCCTGCGCCTGGCGGATGACCCGTTGCGCCTGGGTCAGCAGGCGGATTGCACCTTCGCCCCGGCCACGCTGGCGTCGGTCGACCCCGGTGGCGACGGC AAGCCGGCGCGGCTGGAGCAATTCTTCTTCGGCCTTGGCGGCCCCAATGGCCCGCTGCCGCTGCACATCACCGAGTACGTGCGCGAGCGTCAGCGCAACA ACGCCGACAGCACCAGCAAACAGTTCCTCGATGTGTTCCACCATCGCCTGCTCAGCCTGTTTTACCGGGCCTGGGCCGAGGCGCGGCCGACAGTCAGCCA CGACCGTCCTGACGATGATTACTGGTCCGCGCGCCTCGCCGCCCTGAGTGGACGGGGCATGCCAAGCCTGCTGAATCAGGGGCTCATCCCGGACACCGCG
|
|
| Amino Acid Sequence |
>type VI secretion system protein ImpG
MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPD EGSLASGFPLPRDTVLRAALGRETQTCCEYRTAHPVMLWPLQVSNAEYFGNPAAVLGRLAASEPKAKAGLRLTLRTGAELPFNSLDLDNLPLYLSGADEQ PFRLYEQLLGNACAVFARKPGGDWVERLPQDALRSRGFDDADAAMPVVARAFQGYRLLQEYFALPHRYLFVEFAELSRAVKRCDGQELELIVLFDRHEPS LEGSVGAAQFLPFCTPAINLFPKRVDRIHLSDRVNEHHVIADRTRPMDFEIHSLSGITGHGTGPEQPFLPFYAVRDPSRYGRDQAYYTVRREPRVLSSDQ RRNGPRSTYVGSETFVSLVDSRQSPYGHDLRQLGVTALCTNRDLPLFMSIGNGKTDFTLADSAPVLSVRCVAGPSRPRASHAHDAKAWRLISQLSLNYLS LSEQGQGAAALRELLRLYGDSNDAALQLQIEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVLERFLARYVSINSFTETVIRT TERGEIMRWKAKPGRRPTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|