Pseudomonas sp. 2-92, U367_RS0118865
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold3.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCAGCAGATCGCCGCGCCGCGAACCCTCTACGAAGAACCGAAGAACACCTTCGTCGCCAACTTCATCGGCGAGAACAACCGGCTCAATGGCCGCTTGC ACAGCCATACCGGCGAGCGCTGCGTGGTGGAGCTGGCGCGCGGTGAGAAGGTCGAGGCGCTGGCGGTGAATGTCGGCCAGGTCGGCGGCCCGGTGACCCT GTCGGTACGCCCGGAGCGCGTCAGCCTCAATGGTTCCAGCGAATCTTGCGTCAACCGCTTCTCCGGGCGCGTGGCCGAATTCATCTACCTGGGCGACCAC GTGCGTGTGCGCCTGGAAGTCTGCGGCAAGGCCGATTTTTTTGTGAAACAACCGATTGCCGAGCTGGACCCAGCCCTGGCGGTCGGCGACGTGGTACCGA TTGGCTGGCAAGTCGAGCACGTTCGCGCACTCGACCCACTTCTAGAGGCGAATTGATCGCCCCCCTGGCTTCACCAACCCTGCACGTGGAGAGAACAACA
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| DNA Sequence for Gene |
>U367_RS0118865
ATGTTGAGATCCCTGAAGTATTCCGCCCTGGCTTTGGGCTTGATGGGCGCGACACAGGCCATGGCAGGCCCGGACCTGACGGTCGTGTCCTTTGGCGGCG CGAACAAGGCGGCCCAGGTCAAAGCCTTCTACGCACCGTGGGAAAGCGCGGGCAACGGCAAGATCGTCGCCGGTGAGTACAACGGTGAAATGGCCAAGGT CAAAGCCATGGTCGACACCAAGAGCGTGTCCTGGGACCTGGTAGAAGTGGAATCGCCGGAGCTGTCCCGTGGCTGCGATGAAGACATGTTCGAGCCACTG GACCCGAAACTGTTCGGCAACAGCGCCGACTACGTGAAGGGCGCGATCCAGCCATGCGGCGTGGGCTTCTTCGTATGGTCCACCGTGCTCGCCTACAACG CCGACAAGTTGGCCAGCGCGCCGACCAGTTGGGCGGATTTCTGGGACACCAAGAAATTCCCGGGCAAGCGCGGCCTGCGTAAAGGCGCCAAGTACACCCT GGAATTCGCACTGATGGCCGACGGCGTCGCGCCGAAGGACGTTTACAAAGTGCTGGCCGGCAAAGATGGCCAGGACCGCGCGTTCAAGAAACTCGACGAG CTCAAGCCATCGATCCAGTGGTGGGAAGCGGGTGCACAGCCGCCGCAATACCTGGCTTCGGGCGACGTGGTGATGAGTTCGGCCTACAACGGCCGCATCG CCGCCGTGCAGAAAGAAAGCAACCTGAAAGTGGTGTGGAACGGCGGGATCTACGACTTCGACGCGTGGGCGATTCCTAAAGGCCTGGCGAAAGACCGTGC TGAAGCGGCGAAGAAATTCATCGCCTTCTCGGTGCAACCACAGCAGCAGAAGACCTACTCGGAAAACATCGCCTACGGTCCGGCCAACACCCAAGCCGTG CCGTTGCTGGCCAAGGACATCCTCAAAGACATGCCGACTACCCCGGAAAACATCGCCAACCAGGTGCAGATCGACGTGAGCTTCTGGGCGGATAACGGTG AGCAGTTGGAGCAGCGCTTCAACTCGTGGGCGGCCAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACCACCTGCTGTGTTTGATGGGCTTTTGTGGTGAGCGGGCTTGCCCCGCGCTGGGCTGCGAAGCAGTCCCAAACCAGGCGCTGTGTTTTGTCTGACAGA ACGCGGTGCTGGTCAAAAGGGGCTGCTTCGCAGCCCAGCGCGGGGCAAGCCCGCTCACCACAGAGTCAGAGCCCAGACACAGGTTTGTCGTCATTTTTAG ATTTTCGGAGTCAGCCATGGCCATCGCCGTTCCCTCGAACGAGGTCAACAGCCCCACCCTCAAGCAGCGCCTGGCGCGTGCCGAGCGGCTCAATCGCTGG AAGGCCCAAGCCTTGATCGCGCCGCTGGTGCTGTTCTTGCTGCTGGTGTTCCTGGTGCCGATTGTTGCGCTGCTGTTCAAAAGCGTCGGCAACCCCGAAG TGGTGGGCGGTTTGCCGCGTACGGTGGTGGCGGTGACGGCATGGGATGGCCGGGGTTTGCCGGGCGAGCCGGTGTACAAGGCCCTCAGTGAGGACTTGGG
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MLRSLKYSALALGLMGATQAMAGPDLTVVSFGGANKAAQVKAFYAPWESAGNGKIVAGEYNGEMAKVKAMVDTKSVSWDLVEVESPELSRGCDEDMFEPL DPKLFGNSADYVKGAIQPCGVGFFVWSTVLAYNADKLASAPTSWADFWDTKKFPGKRGLRKGAKYTLEFALMADGVAPKDVYKVLAGKDGQDRAFKKLDE LKPSIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGLAKDRAEAAKKFIAFSVQPQQQKTYSENIAYGPANTQAV PLLAKDILKDMPTTPENIANQVQIDVSFWADNGEQLEQRFNSWAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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