Pseudomonas sp. 2-92, U367_RS0125410

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 2-92(2010) strain 2-92 scaffold2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGAACGCGCCGTGGCGCAGCCGCACATTCGCCTGGTCACCGGCGGCAAGGCAGTGGAAGGCAATGGCTTCTTCTTTGAACCGACCGTGCTGGCTGACGC GCAGCAGGACGATGAGATCGTTCGCCGCGAAGTGTTCGGGCCGGTGGTATCGGTGACCAAGTTCACCGATGAAGCGCAGGTGCTGGGCTGGGCCAATGAT TCGGACTACGGCTTGGCGTCATCCGTGTGGACCGCCGATGTAGGACGCGCCCACCGCTTGGCCGCACGCCTGCAATACGGCTGCACCTGGGTGAACACCC ACTTCATGCTCGTCAGCGAAATGCCCCACGGCGGTCAGAAGCTGTCCGGCTATGGCAAGGACATGTCCATGTACGGGCTGGAGGACTACACCACCGTGCG CCATGTGATGTTCAAGCACTAACCCCAGCGCCACCCCTGTAGGAGCCGGCTTGCCGACTCCTACAGGGGTCTTATAACAATAAAATTTAGGTTCCTCCCC
DNA Sequence for Gene
>U367_RS0125410
ATGGATATCACCCGCCGCGACTTCCTCAACGGCGTCGCTGTCACCATCGCCGCCGGCATGACCCCACTGCAAATCCTGCAAGCCGCCCCCGATGGCCGTT ACTACCCACCCGCCCTCACCGGCCTGCGCGGCAGCCATGCCGGCTCGTTCGAAGTGGCGCACCAGATGGGCTGGGAAAAGAAGGTGTTCGACACCGACAC ACTGCCAATCACTGAGGACTACGACCTGGTGGTCGTGGGCGGCGGCTTGAGTGGTTTGTCGGCGGCGTGGTTCTACCGCGAGAAGCACCCCAAGGCGAAG ATCCTGATCCTGGAAAACCACGACGACTTTGGCGGCCACGCCAAGCGCAATGAATTCCAGGCCGGTGGCCGCATGATCATCGGCTACGGCGGTAGCGAAG CATTCCAGTCGCCCAATCACCTGTACAGCAAGGAAGTGAACGGGCTGTTGAAAAAGCTCGGGGTGAACATCAAGCGCTTCGAAACCGCCTTCGACCGCCA ATTCTACCCAGGCCTTGGGCTGTCACGCGGGGTGTTCTTCGACAAGGAAAACTTCGGCGAAGACAAACTGGTGACCGGTGACCCGACGCCGATGGTGGCC GACGATATTGCACCGGACCAGTTGAATGCCCGCGCCATCCGCGACTTCATCAATGACTTCCCCTTGCCAGCGGCAGACCGCCTGGCCCTGATCGAACTGC ACACCGCGCCCAAGGATTACCTGCCGGGCAAGACGGCCGAAGAAAAGGCCGACTACCTGGCGGCTACCAGCTACCGCGATTTCCTGCTCAAGAACGTAGG ATTATCGGAAGGTGCGGTGAAGTACTTCCAGAGCCGCACCAATGACTTCATGGCGTTGAGCATCGATGCGGTAGCTGCTGCTGACGCTTATAGCGTGGGT TTCCCAGGTTTTGCCGGGATGAACCTGGCGCCGATCAGCGAAGAAGCGGCAGCGGAAATGGAAGAGCCCTACATCTACCACTTCCCGGATGGCAATGCCT CGGTCGCGCGGTTGCTGGTGCGCAGCTTGATCCCGGGCGTGGCACCAGGGCACACCATGGACGATATCGTGCTGGCGGCGTTCGACTACGCCAAGCTCGA CCAGCCCAAGGCAGCCGTACGGCTGCGCTTGAACAGCACGGCGGTCAGCGTGCGTAACGTTGGCAACCGCGTGCATATCGGCTATAGCCGTGGCGGACAA CTCGCACAGGTGCGCGGCAAACGCTGCATCCTGGCCTGCTACAACATGATGATCCCCTACCTGTTGAAGGATTTGCCGGCGCCCCAGGCCCAAGCGCTCA GCCAGAACGTGAAGTACCCGCTGGTGTACACCAAGGTGGTGATCCGCAATTGGCAGTCGTTCCAGAAGTTGGGCGTGCATGAAATCTACGCGGCGACCCA ACCTTACAGCCGCATCAAACTGGACTATCCGGTAAGCATGGGCGGCTACGACCACCCGCGCGACCCGGCGCAGCCAATCGGCTTGCACATGGTCTATGTA CCCACCAGCCCCAACAGCGGCATGAACGCCCGCGACCAGGCCCGCGCCGGGCGGGGCAAGCTCTATGGGCAGACGTTCGAGCAACTGGAAGCGCAGTTGC GTGACCAGTTGCAACGCATGCTCGGGCCGGGCGGTTTTAACCATGAGACCGACATTCTGGCGATCACTGTCAACCGCTGGTCACACGGTTATGCGAGCTT CTCCAACAGCTTGTTCGACGATGCGGACCAGAGCGAGGCGTGGATGAACCTGGCGAAAAAGCCGGTGGGGCATGTGAGCATCGCCAACTCGGACGCGGCG TGGAGTGCGTATGCGCATGCGGCGATTGATGAGGCGTATCGCGCCGTAGGCGAAATCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCTTGTAGGAGCCGGCTTGCCGGCGATGAGGCCCATGAGCCTTGCAGCGTTCTCTCGGACGCCATCGCCGGCAAGCCGGCTCCTACAGGGGATTTTTGT GAGTCGGAAATGTCTTGTCGCATTTGCTAGGCCATCACGTCGCTATCAATCAATTTTCCTACGTCATCGAACCGCTTAAGCTATCCGGCGTCTGTTTAAT GTCCGTTGTGTTTGGCCGAAGGCATGTCCGAACCGTAATTTCTGATCCGCTACGTGCCAGGAACGGCGCGGGATTTGCTCACGACAGGTTGTCTCTATGC ACCGCAGGAATTTGCTCAAAGCGTCCATGGCCATTGCGGCTTACACCGGTTTGTCGGCCAGCGGCCTGCTCGCCGCCCAGGCCTGGGCCGGGAACCGTGC TGCTGATGGCAAGGCCGTGGCGTTCGATTTCGACTCGCTCAAGGCCCAGGCCAAACAACTCGCCGGGACCGCTTACAAGGACACCAAACAGGTGCTGCCG
Amino Acid Sequence
>spermidine dehydrogenase
MDITRRDFLNGVAVTIAAGMTPLQILQAAPDGRYYPPALTGLRGSHAGSFEVAHQMGWEKKVFDTDTLPITEDYDLVVVGGGLSGLSAAWFYREKHPKAK ILILENHDDFGGHAKRNEFQAGGRMIIGYGGSEAFQSPNHLYSKEVNGLLKKLGVNIKRFETAFDRQFYPGLGLSRGVFFDKENFGEDKLVTGDPTPMVA DDIAPDQLNARAIRDFINDFPLPAADRLALIELHTAPKDYLPGKTAEEKADYLAATSYRDFLLKNVGLSEGAVKYFQSRTNDFMALSIDAVAAADAYSVG FPGFAGMNLAPISEEAAAEMEEPYIYHFPDGNASVARLLVRSLIPGVAPGHTMDDIVLAAFDYAKLDQPKAAVRLRLNSTAVSVRNVGNRVHIGYSRGGQ LAQVRGKRCILACYNMMIPYLLKDLPAPQAQALSQNVKYPLVYTKVVIRNWQSFQKLGVHEIYAATQPYSRIKLDYPVSMGGYDHPRDPAQPIGLHMVYV PTSPNSGMNARDQARAGRGKLYGQTFEQLEAQLRDQLQRMLGPGGFNHETDILAITVNRWSHGYASFSNSLFDDADQSEAWMNLAKKPVGHVSIANSDAA WSAYAHAAIDEAYRAVGEIA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site