Pseudomonas sp. 2-92, U367_RS0108190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold10.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGATGATGTTCGCGTGCCGAGTTGCGGCCCTATCAATGCTGTCAGCACTGTGCCTGTTGGCCGGATGTAGCAGCCTTTCACCTTTTTCGACCCTGACC AAACTGGACTTGACGTTGATCGCAGGTGACGAAGTCAACCCCGACCTGCACGGTCGCCCCTCTCCCGTGGTAGTGCAACTGATTGAACTACGGCACCCCG TGGCCTTTGAAAATGCCGATTTTTTCAGCCTCTACGACCGCTCCGAACAGACACTCTCCAAGGATTGGGTCAGCAGCGAGGAGTTGGAATTGCGTCCTGG TGAACGGCAGGCACTCAAGCTCAGTGTCCAGCCGCATAGCCGCTATGTCGGCGTACTGGCGGCGTATCGCGACTTGCCTCATGTGCAATGGCGGCTCGTG CTGCCGGTAGTCCCGGGGCAATTTACGCGTGCCGACATTGTGTTGGACCAGACGGGGCTACGGATGGCAACCCCTCAGACAGACAGGACGGAGAATTGAG
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| DNA Sequence for Gene |
>U367_RS0108190
ATGCAGGTCCATAACGTTGTCTGGCAAGAGGGCATGCTGTTGCGGCCCCAGCACTTGCAACACAATGACCGCTACTACCATCGACAGCTCAACCGAACTC GGTTGCTGAGCAGTGATGCGTGGGGGTTCCTGACCCTGGACATCGATATGCAGTACCTCAACCTGGGCAAGGTCGTTGTCAACCAGGCCAGCGGAGTATT GCCGGACGGCAGCTTGTTTGAGTTGAGCGGCGCGATGGAGCCTTTGGTGTTGCAGGTGCCTGCCAATGCGGGCAGGCAAGCTGTTTATCTGGCGTTGCCG CTGGCGACCGAGAATCAGGTTGAGGTGCGCAGGAAGGAGCAAAGCGATGTGCTGGCACGCTACGTCGCCTGTGAATCGGAAATCGGCGACTCCAACGCCG GCGTTGATTCTCGTTGCCAGATCAACTGTGCACACCCGGACTTTCGGCTGATGCTGGGCGATGGGCCCAGTGATGCGTTCTACGTGAAGCTCCAGGTCGC CCAAGTGCAAGATTCGACTCGCGAGGATGGCGTAAGCCTGGATGCGGACTTTGTGCCGACGTTCATCTATCTCCAGAGCGCCGGATATGTGCCGTCATGC ATCAAGGAGGTGATCAGTCTGCTGGCGACGCGTGGCGATGCGATTGCAACGCGAATCCAGGGGAGTGGTGCCTCGACAGGAGCACAGGTCGGCGACTTTC TGATGCTGCAACTGATCAATCGTGCCGAGTTGGTCCTGCGTCACTACCTGGTGCAGGCTCAAGTGCGTCCGGAGCTGCTGTATCGGGAGTTGCTCTCGAT CCTCGGCGAACTGTCGACGTTCGCCAACGACAACAAGCGCGCACAACTTGCCGTGCACTACCGGCATGGCGATCAGGGGGCGAGCTTTCGTGGGCTGATG GAGGGGCTTCGCGCTGTATTGTCGTCGGTGCTGGAACAACATGCCATCGAGTTGGCGTTGCAAAAGCGGCAATACGGGGTGCTGGTTTGCCCGGTCAGTG ATCTCAAGTTGCTCGGCACCGCCACCTTCATTTTGGCCGCCACCGCCCAATGTGATTCGGAAGAGCTTCGCCATCGTTTGCCGGCGCATCTCAAGATCGG CCCCGTAGAACGCATCCGCGAGCTGGTGAACCTGCACCTGGCCGGTATCAAGGTCCAGCCGCTGCCGGTCGCGCCGCGGCAGATTCCGTATCACGCCGCC AAGACCTATTTCATGCTCGAACTCAGTCCTCGTGATATCGCGCAGTTGGAGCAGTCGGGTGGTTTTGCCTTCCACGCGAGCGGCGAATTCGCGGAGCTAG AACTCAACTTCTGGGCTATCAGGAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATACCATGACGAAGGGCAGTGAATACCCGCAGGATGAAAAAACCGTACTACTTGACCGTGATGGGCTCGGGCCGGCGCTGGGACCCGTTACAGACTTCCC ATCGCCGCCACGCTTCGCGCAGTTGGAAGATCGGATGATCTACGCCGCCAACCTCCCGGGGCAGCGTTTCAAAATGGGCTCCAACATGCTGTTGGCAGCG GGCTGGGAGCTCTTGTCGCAGATTGCCCAGCTCAAGGCCAGCCCCGCTCGGGAAAGCTTGCAAGCGCTCAATGACCAGCTCTCATCGTCCATCAGCGCAT TTGAGGCCCATGCCTTGCACTTGGGGGCAGAGAGCAGCCAGGTGATGTCGGCGCGTTATGTGCTGTGCAGTGTCATCGACGAGGCGGTAGTCACCACGCC TTGGGGCAGTTGCAGCGATTGGTCGAAGAAGAGCCTGTTGAGCCGCTTTCACAACGAAACCTTCGGTGGTGAAAAGTTTTTCCAGTTGCTGGAGCGATTG
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| Amino Acid Sequence |
>type VI secretion protein
MQVHNVVWQEGMLLRPQHLQHNDRYYHRQLNRTRLLSSDAWGFLTLDIDMQYLNLGKVVVNQASGVLPDGSLFELSGAMEPLVLQVPANAGRQAVYLALP LATENQVEVRRKEQSDVLARYVACESEIGDSNAGVDSRCQINCAHPDFRLMLGDGPSDAFYVKLQVAQVQDSTREDGVSLDADFVPTFIYLQSAGYVPSC IKEVISLLATRGDAIATRIQGSGASTGAQVGDFLMLQLINRAELVLRHYLVQAQVRPELLYRELLSILGELSTFANDNKRAQLAVHYRHGDQGASFRGLM EGLRAVLSSVLEQHAIELALQKRQYGVLVCPVSDLKLLGTATFILAATAQCDSEELRHRLPAHLKIGPVERIRELVNLHLAGIKVQPLPVAPRQIPYHAA KTYFMLELSPRDIAQLEQSGGFAFHASGEFAELELNFWAIRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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