Pseudomonas sp. 2-92, U367_RS0114830
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 2-92(2010) strain 2-92 scaffold1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCGATACGGCCGATTGTAGCCACGGGCCAACCCTCAAACACAAGCCGGGAAATCCATTCGGTGATCACGTTTTTTTGTGATAGGGTTCGCGCCCTTCG AAAATGGGCAGGTTGTTTTAAGCCCGAAACATTTAATGACAAACGGCGTAATCCAGCAGCAGTGCGGCCTACACACCCATTCAACCTTTCTTACACATTT TACCCACAGCGTTATCCACAGGTTACTGCGTTGCTAACCCCTCGAAAACGCATTATCTTGTACCTCGGCACTGGAGAAGACCCTACATGTGGGGTTTTTG AAGAAAGCGCCCAACCACACAAGTGGCAAGAAATTCAAGCGTTTTATTGCTAGCGCAGCATGGAACCAACCGATTTTCAGTAGACCAAACCGCTCACGCG GATGGCAGCTGTTTCCCATCCCCGATATGGAAAACGGTACGGGTGTTGCAGGAAGAGCCTGGCACTCGCAATCAAATATAGAACGTGGAGACAACCCCCC
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| DNA Sequence for Gene |
>U367_RS0114830
ATGCAAACCGACACAACTCGCGAGAACCCGCAAGGCTCCGTGCCGCAGGCCGCCGATTCGAACCTGGATCTGTCCGCCACCGCACCTGGCCAATTGCGCG TGATCAAGCGTAACGGCACTGTCGTTCCTTACACCGATGACAAAATCACCGTCGCCATCACCAAAGCGTTTCTTGCAGTTGAAGGCGGCACCGCTGCTGC CTCGTCGCGCATCCACGACACCGTTGCCCGCCTGACCGAACAAGTCACCGCGACCTTCAAGCGTCGCATGCCTTCGGGCGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGCGAGCAGAAAGTTGCCCGCGACTACGTGATCTACCGCGACTCGCGCGCCAAGGAACGTGCCG TACGTTCCCCGGCCGAAGAAGCCGCCGTACAGGCTCACCCGTCGATCCGCATCACCCTGGCCGACGGTAGCTTTGCACCGCTGGACCTGGGCCGCCTGAA CACCATCATCACCGAGGCCTGCGAAGGCCTGGAAGAAGTCGATGGTGACCTGATCCAGCGCGAAACCCTGAAAAACCTGTACGACGGCGTGGCCCTGACC GACGTCAACACCGCCCTGGTGATGACCGCCCGTACCCTGGTTGAACGTGAGCCGAACTACTCGTTCGTGACCGCGCGCCTGCTGATGGACACCCTGCGTG CCGAAGGCCTGGGCTTCCTGAAAGTCGCCGACAGCGCTACCCACCACGAAATGGCCGACCTGTACGCCAAGGCCCTGCCGGCCTACATCGCCAAGGGTAT CGAATTCGAATTGCTGAACCCGGTCCTGGCCACCTTCGACCTGGAAAAACTCGGCAAGGCGATCAACCACGAGCGCGACCAGCAGTTCACGTACCTGGGC CTGCAAACCCTGTACGACCGTTACTTCATCCACAAGGACGGTATCCGCTTCGAACTGCCGCAAGTGTTCTTCATGCGCGTGGCCATGGGCCTGGCGATCG AAGAGAAGCAGAAAGAAGACCGTGCCATCGAGTTCTACAACCTGTTGTCGTCCTTTGACTACATGTCGTCGACCCCGACCCTGTTCAACGCCGGCACCCT GCGTCCACAGCTGTCCAGCTGCTACCTGACCACCGTGCCGGATGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGTTGTCCAAATTCGCT GGCGGCCTGGGTAACGACTGGACCCCGGTGCGCGCACTGGGTTCGTACATCAAGGGCACCAACGGCAAGTCCCAGGGCGTTGTTCCGTTCCTGAAAGTCG TGAACGACACCGCCGTTGCGGTCAACCAGGGCGGCAAGCGCAAAGGCGCTGTCTGTGCCTACCTGGAAACCTGGCACATGGATATCGAAGAGTTCATCGA GCTGCGTAAGAACACCGGTGATGACCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCTGACCTGTTCATGAAGCGTGTCTTCGATGACGGC AAGTGGACTCTGTTCTCGCCATCCGAAGTGCCGGACCTGCACGACCTGACCGGTAAAGCCTTCGAAGAGCGCTACGAGTACTACGAAGCCCTCACCGAGT ACCCAGGCAAGGTCAAGCTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAAATGCTGTCCATGCTGTTTGAAACCGGCCACCCATGGCTGACCTT CAAAGACCCGTGCAACCTGCGCAGCCCGCAGCAGCACGTGGGCGTGGTCCACAGCTCGAACCTGTGCACCGAGATCACCTTGAACACCAACAAGGACGAG ATCGCCGTTTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCAACGGCAAGCTGGACACCGCCAAGCTGGAACGTACCGTCAACACCGCCGTGC GCATGCTCGATAACGTGATCGACATCAACTACTACTCGGTGCCACAGGCGCAGAACTCCAACTTCAAGCACCGTCCCGTGGGCCTGGGCATCATGGGCTT CCAGGACGCGCTGTACCTGCAGCACATTCCATACGGTTCGGACGCGGCGGTCGAGTTCGCCGACAAGTCCATGGAAGCGGTCAGCTATTACGCGATCCAG GCTTCCTGCGACCTGGCCGACGAGCGCGGTGCCTACGAGACGTTCCAGGGCTCGCTGTGGTCCAAAGGCATCCTGCCGCTGGATTCGCAACAGATCCTGA TCGAGCAACGTGGCCAGAAGTACATTGATGTTGACCTGGAAGAATCCCTGGACTGGGCGCCAGTACGTGCCCGTGTGCAGAAAGGTATTCGTAACTCCAA CATCATGGCCATCGCACCGACCGCGACCATCGCCAACATCACCGGCGTATCGCAGTCGATCGAACCGACTTACCAGAACCTGTATGTGAAATCGAACCTG TCGGGCGAATTCACCGTGATCAACCCGTACCTGGTCCGCGACCTGAAAGCCCGCGGCCTGTGGGACTCGGTCATGATCAACGACCTGAAGTACTACGACG GCTCCGTGCAGCAGATCGAGCGCATCCCGCAAGAACTCAAAGAGCTCTACGCGACGGCCTTCGAAGTGGACACCAAGTGGATCGTTGACGCCGCCAGCCG TCGTCAGAAGTGGATCGACCAGGCTCAGTCGCTGAACCTGTACATCGCCGGCGCTTCGGGCAAGAAGCTCGACGTGACCTACCGCATGGCGTGGTACCGT GGCCTGAAAACCACTTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAGTCGACCATCAACACCGGTAAGCTGAACGCGGTTTCCAGCGGCAACC ACGGTGATGATTCGGTACTGGCTGCTCCAGCCGGCCCGGCCCCAGTGCCAAAGGCTTGCGCGATCGATGAGCCGGATTGCGAAGCTTGCCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGAGCCGGTCCCGGGCCTAACTGCCCGGGATCGCGTAAAACCGATAAGGCCTGTACTCACAGGGCTTATCGGTTTTTTTATGAGCGATCATTTAAACG TGTACGCATTACCCGGCCGTGGCGCGCCACCCCGCCGTCCCCAAAGCTCTATGCTGCCCTCTATCACAGCCATCGAATGGCCACCGTAATCCACGACGCC TAACTTACCGCTTGCGAGTTCAGCGCTCGAAGAGCTCCGGTAAAGACCGTTCAACCCAAGCCTATTCAGCGCCTCCCAGCCCATTTCGCCATTGTTCAAA CTCTGCATCGCATGGGCAAAGCTCTGTTTTGCAGTATTGGTATTGTCGTCGAACCCATTGCCCTCTTTCTGCGCTCGCTTGGCACTTGCCGCGTACATGA AGTTAGCATCGGTCATCATGGCCGGATCATCTCCTTGGAACTGCGCATACCTTGCAGCCTGCTTCAATTCGTCCTTAGACAGATGCAGCTCGAATCCATC
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQGSVPQAADSNLDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRSPAEEAAVQAHPSIRITLADGSFAPLDLGRLNTIITEACEGLEEVDGDLIQRETLKNLYDGVALT DVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLKVADSATHHEMADLYAKALPAYIAKGIEFELLNPVLATFDLEKLGKAINHERDQQFTYLG LQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFA GGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDG KWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDE IAVCNLGSINLPNHIVNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQ ASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLEESLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNL SGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYR GLKTTYYLRALAATSTEKSTINTGKLNAVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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