Pseudomonas sp. MOIL14HWK12:I2, PSK12I2_RS0109360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MOIL14HWK12:I2 PsK12I2DRAFT_scaffold_6.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCCCGTCGCCTCCTGCACATAGACCCCGCGCCCGGGCTGGACGCTGACCAGGCCCAGGGCACTGAGGGTGGACAGTGCCTCGCGCAGGGAGGCGCGAC TCACCCCCAGCCGCTCGGCCAGCTCGCGCTGCGCGGGCAGGGCCGCGCCGGGGGCATAGCCTTCGGTCTCGATCAGCCGGCGAATGGCGTCGACGGCATA TTGGGGTACGGCACGGGTGGCAGCGAGGGGCATGGCGTGGTCAGGCCAGTCAGTCCGGAAGCTTGCCTTTTATGCCCAATTTCCAGCGACTTCAAGTGCA GCCCCAAGGCAGAGCACGCCGCCATAGCCGCGCACCAAAGCGGCTCACGGCAAGCGGAAGTTCAGGGTGCTGAGCGGGACAACTGTTCAGACCAGTAAGA CCAATCCTCAGGCCAGACGGCCCTTGCACCCGTCTGGCAGGGGACTGGCACATGAAATGCACTGGGCAGAGCCATCCCTTCCTGCTTTCGGAGTCTCGTC
|
|
| DNA Sequence for Gene |
>PSK12I2_RS0109360
ATGCTCAAGCGCTGGACCGCCCTCTCCCTGCTCGCCCTGGGCCTGACCGCCCTGCACACCTCCGCCCAAGCCGATCAGCTGGCCGACATCCAGCAGCGCG GCGTGCTCAAGGTCGCCGTGCCGCAGGACTTCCCGCCCTTCGGCTCGATCGGCCCGGATCTCAAGCCGCGCGGCCTGGACATCGACACCGCACAACTGAT GGCGGACAAGCTGAACGTGAAGCTGGAAGTCACCCCGGTCAACAGCACCAACCGCATTCCCTTCCTGACCACCGGCAAGGTCGACCTGGTCATCTCCAGC CTGGGCAAGAATCCCGACCGCGAAAAGGTCATCGACTTCAGTAAGCCCTATGCGCCCTTCTATCTCGGCGTCTTCGGTCCCAAGGATGCCGCCATCAGCA CGCCCGAGCAGCTGGCCGGCAAGGTGATCTCGGTGACCCGCGGCTCCATCGAAGACCTGGCGCTCACCGACGTGGCGCCGAAGGACAGCGTGATCAAGCG CTTCGAAGACAACAACTCCACCATCGCCGCCTACCTGGCCGGGCAGTCCGAGCTGATCGCCAGCGGCAGCGTGGTGATGAAGGTGATAGGTACGCGCAAT CCGGCCAAGGAGCCGGTGCTCAAGGTCAAGCTCAAGGATTCGCCGGTGTACGTGGGCATCAACAAGAACGAGCCGGCGCTCAAGGCCAAGGTCGACGCCA TTCTCGACGCGGCCCGCGCCGACGGCACCCTGAGCAAGAACTCCGAAAAATGGCTGGGCGATCCCCTGCCGGCCACTCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGATCGACGCGCCATGGCGTATCAGTTCGACTTCCAGCCTGTGCTCGCGCAGAGCGACCTGCTGCTCAAGGGAGCGCTCTACACCCTTGAGCTGACGGTG ATCGGTGGCTTCTTCGGCATCCTCATCGGCATCGTCGGCGCCACCTGCCGCGCCTGGCGCCTGAAACCCTTCGCCCAGGCCTTCGGGGTCTATGTCGAAC TGATCCGCAACACGCCCTTCCTGATCCAGCTGTTCTTCATCTTCTTCGGCCTGCCCTCCATCGGGGTGCGGATCGAAGCCGGCCAGGCGGCGGTGCTGGC CATGGTCATCAACCTCGGCGCCTACTCCACCGAGATCATCCGCGCCGGCATCCAGGCGATCCCGCGCGGCCAGCTGGAAGCGGCGGCGGCCCTGGCCATG ACCCGCTTCGAAACCCTGCGCTACGTGATCCTGCGCCCGGCGCTGGCCAAGGTCTGGCCGGCGCTGTCGAGCCAGGTGGTGATCGTGATGCTGGGCTCGG
|
|
| Amino Acid Sequence |
>amino acid ABC transporter substrate-binding protein
MLKRWTALSLLALGLTALHTSAQADQLADIQQRGVLKVAVPQDFPPFGSIGPDLKPRGLDIDTAQLMADKLNVKLEVTPVNSTNRIPFLTTGKVDLVISS LGKNPDREKVIDFSKPYAPFYLGVFGPKDAAISTPEQLAGKVISVTRGSIEDLALTDVAPKDSVIKRFEDNNSTIAAYLAGQSELIASGSVVMKVIGTRN PAKEPVLKVKLKDSPVYVGINKNEPALKAKVDAILDAARADGTLSKNSEKWLGDPLPATL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|