Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0129065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_9.10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTGGGACCCGCGCAACCAGCAACTGGTGCTCGGAGAGGAACGCCCGCCAGCGCTGTTCACCTGGAAAAGCGATGGCAGCCAGTCGCTCAAGGGCGAC AAGCAGATCCATGTCAGCAATGAACTGGACCTGCGCAATCTCTCGGCACTGGCGATCGATCCGCGCACCGGGCACATGCTGGTGCTTTCGGCCGACTCGC ATCTGTTGCTGGAACTGGACGAAAAAGGCGAGCAGGTCAGCTTCATGACCTTGCTGGGCGGCTTCAACGGCTTGAAAGACACAATCCCTCGTGCCGAAGG CGTCACCGTCGATGAGGCCGGCAATCTGTACATGGTCAGCGAGCCGAATCTGTTCTATCGTTTCGAAAAACAGCGCTGACAGCACTAACTCTGCGGGATA AATCTTCCTTCGTTGTAGGGTGTGGCACACAGCCATTAAGCTTCAGTTCAGGCAGCCGTGGTATTTCCACGCACCTGTTCTTATCCGAGCCCACCCTGAC
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| DNA Sequence for Gene |
>PSBVI21_RS0129065
ATGCGTCGACTCGCCCGCCCAAAACCCTTGATCCTGATGCTGCTGACGCTGGCGCTGATCTTCCTGATCGCCGCCGGCCAGCACCTGCGCCTGTTCGAAC GCGCCTGGTTCAACGTCAACATCCTCTTCAAACCCATCAACGAGCAAGCCATCGCACTGGACCAATACCAGGTCACAGTCGAGGCGCAGGTAATCGAAGG CCTGAACGATGACGTTTCGGCGCTGACGTTCGATCCGGTACGCAAGAGCTTGTTTACAGTTACCAACCAGAATTCCGAGCTGATCGAGCTGTCACTCGAT GGCAAGATCCTGCGGCGCATTGCGCTGATCGGCTTTGGCGATCCGGAGGCAGTGGAATTCATCAGCGAAGACATCTACGTCATCACCGACGAGCGCCAGC AGCGGCTGATAAAGATTCGCCTGGAAGACGACACCCAATTCCTCGACGCCGCCGAAGCCGAACAGATGACCCTGGGCGTGCATATGAGCGGCAACAAGGG GTTCGAAGGACTCGCCTACGATTCGGTAGGCAAACGCCTGTTCGTAGCGAAGGAACGCGACCCGATGCTGATTTATGAAGTGCATGGGTTTCCTCACCAC AATCCGGAAAAGTCCTATGCAGTCCATGTGATCAACAACCCCAAGCGCGATGCCGGGTTGTTCGTGCGCGACCTCTCAAGCCTGCAATACGACGAACGCA GCGGCCATTTGCTGGCGCTGTCCGAGGAGTCGCGGTTGATTATCGAATTGGATATCGACGGCCGGCCATTGAGCACGCTGTCGTTGAGCAAGGGCCGCCA GGGCCTGCAAAAAACCGTGCCCCAGGCCGAAGGCCTCGCCATGGACGACGATGGCAACCTGTATCTGGTGAGCGAGCCGAATCTGTTCTACGTGTTCAAG AAGTCACAACCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCACTTACCCTGAACTACCACAAAAACCCAATGTGGGAGCGAGCTTGCTCGCGATAGCGGTGTATCAGCCATGAAGGTATCGACTGACATACCGCCATC GCGAGCAAGCTTGCTCCCACAGGGTCCGGTGTTGAATCCAATAACTGATCGCCCGGTTTATTCAGCCCGCAGGGTCTTCACCCCTTCAGGGGTCCCTAGC AGCAGCACATCCGCAGGCCGTGCAGCGAACAAACCGTTGGTGACCACGCCCACGATGGCGTTGATCTGGCTTTCCAGTTCCACCGGGTTGGTGATCTGCA GGTTGTGCACGTCGAGGATGATGTTGCCGTTATCGGTCAGCACGCCTTCGCGATACACCGGGTCGCCGCCCAGCTTCACCAGTTCGCGGGCCACATGACT GCGGGCCATCGGGATGACTTCCACTGGCAATGGGAACGCGCCAAGCACCGGCACCAGTTTGCTGGCGTCGGCGATGCAGATGAAGGTCTTGGCCACGGCC
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| Amino Acid Sequence |
>DNA-binding protein
MRRLARPKPLILMLLTLALIFLIAAGQHLRLFERAWFNVNILFKPINEQAIALDQYQVTVEAQVIEGLNDDVSALTFDPVRKSLFTVTNQNSELIELSLD GKILRRIALIGFGDPEAVEFISEDIYVITDERQQRLIKIRLEDDTQFLDAAEAEQMTLGVHMSGNKGFEGLAYDSVGKRLFVAKERDPMLIYEVHGFPHH NPEKSYAVHVINNPKRDAGLFVRDLSSLQYDERSGHLLALSEESRLIIELDIDGRPLSTLSLSKGRQGLQKTVPQAEGLAMDDDGNLYLVSEPNLFYVFK KSQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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