Pseudomonas sp. LAIL14HWK12:I5, F629_RS0125580 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00040.40_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGTCGGCACGCAGGATGAACATCACGTACTTGAACGACACCACCCACAACAGCGACCACAGGATCAATGACAGGATCCCCAGCACGCCATCATGGTTGA CCGGCACCCCGTAACCGCCGGTGAAGACTTCCTTCAGGGTGTACAACGGGCTGGTGCCGATATCGCCATAAACCACCCCGACCGCCGCCACGAGCAGGCC CAGCGACCGCGCCGCGCCCTGCTTCCCCTCGTGCCCGCCCTCGGCGTGACTGCTTGCCTGAACCATCGACCACTCCCGCAGACGGCCATCACGGCCTTTA ATATTCACTCTAGCGCCGGCCCCTGAAGGCACCTTCGCTCAACGGCGCGAAGCATAGCGCAGCGTTCGTCGTATTTCTGCTGGTCAAGCGACGTTACGCT CGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCCAAAGCGCCCGTCAAGATCGCCCCCGATTCCGGCCGGGCGACCTGCATTCAATACCGAGGTTAGTC
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| DNA Sequence for Gene |
>F629_RS0125580
|rimO
ATGTCCACCACGCCCGCCACCCCCAAGGTAGGTTTCGTAAGCCTGGGTTGCCCTAAAGCCCTGGTCGATTCCGAGCGCATCCTGACCCAGCTGCGCATGG AAGGCTATGAAGTCGTGCCCACCTACGAGGACGCCGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCAGAATCGCTGGAAGTGAT CGGCGAAGCGATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGTGTCGAAGAAGGCAGCATCCGTGATGTGCACCCGAGCGTGCTGTCGGTC ACCGGCCCACAGCAGTACGAGCAGGTGGTCAACGCCGTTCACGAAGTGGTACCGCCACGCCAGGACCACAACCCGCTGATCGACCTGGTGCCGCCTCAGG GCGTCAAGCTGACCCCGCGCCACTACGCGTACCTGAAAATTTCCGAAGGCTGTAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGGCAAGCT GGTCAGCCGCCCGGTGGGTGAAGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTGAAGGAGATCCTGGTGATTTCCCAGGACACCAGCGCCTAT GGCGTCGACGTCAAGTACAAGACCGACTTCTGGAACGGCCGCCCGGTCAAGACCCGCATGCTCGAATTGTGCGAAGCACTGAGCAGCCTGGGCGCCTGGG TACGCCTGCACTACGTGTACCCGTACCCGAACGTCGACGACGTGATCCCACTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTTCCAGCA CGCCAGCCCGAAAGTGCTCAAGTCGATGAAGCGCCCGGCCTTCGAAGACCGCACCCTGGCGCGCATCAAGAACTGGCGCGAACAGTGCCCCGAGCTGGTG ATCCGCTCCACCTTCATCGTCGGCTTCCCGGGCGAAACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAGCTGGACCGCGTGGGCT GCTTCCAGTACTCGCCGGTAGAAGGCGCACCGGCCAACGACCTGGGCCTGGAAGAAGTGCCGGACGACGTCAAGCAGGACCGCTGGGACCGCTTCATGGC CCACCAGCAGGCCATCAGCGCCGCCCGACTGCAACTGCGCATCGGCAAGGAAATCGACGTGCTGATCGACGAAGTCGAGGAGCAAGGTTCGGTTGGCCGC AGCTTCTTCGATGCCCCGGAAATCGACGGCAGCGTGTTCATCGACGGCGATCATGGCTTCAAGCCAGGCGACAAAGTGCGCTGCCGTGTGGTGGATGCCG ACGAATACGACATGTGGGCCGAGCCTATTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGGCTGAAACACTGAAAAGCCCCTGCCCCGGTAGCCCGGCGCAGGGGCTTTTTTGTCAAAACGTGTGAAACAGCATCAGCCCCCCCTCTGCATCCGGG CTGGCATCCGAAAAGCCTTTGACCGCATACAGTTGCACTTTCCATTGCGGGTTGAGCTTGTGGGTCAGGAACAAGGTCAGTTCCTTGATCTGCGACCCTG TCGAGAGCACTTTCTGCCGCCAATCGTACGAAGCGCCCGCTGACGTGCCAGTAGCCACAGGTATGGCGAAGCCGAGGCTGACAAATACCGGGTCGTCGAA ATCGCTGTCGGGCGGGTCGCCGAACTTCTTCCAGCCCAATGTCGCGAAGCCGGTGACCGGGCCAAAGCCCTTGGTGATGTCGACCTGGGTGGTGTAGTCG TATTCGCCGGTACCCAGGCACTGGTCTTCATCGGCGGTGGGGAATTTGACCTTGCCGATCAGGTCCAGCATCAGGCCGCCGTCGCTGCCATCGAGCAGGG
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| Amino Acid Sequence |
>30S ribosomal protein S12 methylthiotransferase
MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGSIRDVHPSVLSV TGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAY GVDVKYKTDFWNGRPVKTRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDRTLARIKNWREQCPELV IRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLEEVPDDVKQDRWDRFMAHQQAISAARLQLRIGKEIDVLIDEVEEQGSVGR SFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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