Pseudomonas sp. LAIL14HWK12:I5, F629_RS0114955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00010.10_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGGCGGCGGTGAGAAATGGGCAGAACTTGTGGGAGCGGGCATGCCCGCGAAGAATTCCACACCGATCCACCCGACAAAACAGCGCTTCCCTATTGGCT GGTGAATTTTTATACTATCGAGTCCGCCTGCCCATTACTGGGCTGCAAGCCCACCGCATTTGCTACTGAGGAAGACCATGGCCCGCGTAACTGTTGAAGA CTGCCTGGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCGACCAAGCGCGCTCGCCAGCTGGCGACCGGCGGCAAAGAGCCACGCGTTGCGTGG GAGAACGACAAGCCAACCGTTGTTGCCCTGCGTGAAATCGCCGAAGGCATTGTCACCAACGAGTTCATCGCCGCTGAAGAGATCGTCACCGAGGATCCGG TGTTCGCCGCGTTCGAGGACGAGAACAACGAGGCTGTCTGATTGATGCCAGGTCGACGTCGCACGGCGCAAGGCCCTCTTCCTCCGCAGGAGGTGAACCC
|
|
| DNA Sequence for Gene |
>F629_RS0114955
ATGCCGGGTATAGAAGCCTTGGCCGAACGGCTGTCGACCTATCTTGGCCCCGAACAGGTCAACCTGGTCCGCCGCGCCTATTTCTACGCCGAACAGGCCC ACGACGGGCAGCGCCGCCGCAGCGGCGAGCCCTACGTGACCCACCCGCTGGCCGTGGCCAGCATCCTCGCCGACATGCACATGGACCATCAAAGCCTGAT GGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCAAGGAAGCCCTCAGCCAGCAATTTGGCGAGACCGTGGCCGAACTGGTCGATGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAGGCGCAGGCCGAAAACTTCCAGAAGATGGCCATGGCCATGGCTCGCGATATCCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCTGGCGAAAAGCGCCGGCGCATCGCCAAGGAAACCCTCGAAATCTACGC CCCCATCGCCAACCGCCTGGGCATGCACACCGTGCGCGTGGAGTTCGAGGACCTGGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATCCACCGG GCGGTGAAAAGCGCACGCGGCAACCGTAAAGAGATCGTCGCCAAGATCGAGCACTCGCTGGCCAACTGCCTGGCCGCCGACGGCATCGAGGGCGAGGTCA GCGGCCGGCAGAAACACCTCTATGGCATCTACAAGAAGATGCGCGGCAAGCGCCGTGCCTTCAACGAGATCATGGACGTGTACGCCTTCCGCATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTCGGCGCCGTGCATAACCTGTACAAACCGCTGCCCGGTCGCTTCAAGGACTACATCGCGATCCCCAAAGCC AACGGCTACCAGTCGTTGCACACCACGCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCGCACTGGCTGTACAAGTCCAACGACGACGAGCAGCCCAAGGGCAGCCACGCCCGTGCCCGTCAGTGGGTCAAGGGCATCCTTGAACTGCA GCAACGTGCCGGCAACTCGCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGCATCATGGAG CTGCCCAAAGGCTCCACGGCTGTCGACTTCGCCTACGCGGTGCACACCGACGTGGGCAACAGCTGCATCGCCTGCCGCATCAACCGCCGCCTGGCGCCGC TGTCCGAGCCGCTGCAAAGCGGCTCGACGGTGGAAATCGTCAGCGCACCGGGCGCACGGCCGAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGCACGCACATCCGCCACGCCCTCAAGCAGCAGCGTCGGTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAGGTGCTTACCGGCTTCGACAGC AGCCTGGAGAAAATCCCCCAGGAACGCATCCAGTCGATCCTCGCCGAGTACCGCCTGGAACTCATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAACC GCATGGCCTACGTGGTTGCACGTCGCCTGCTGTCGGCCGAAGGCGAGCAGTTGCCGGCGCCGGAAGGCCCGCTGGCGATCCGTGGTACCGAAGGCCTGGT GCTGAGCTACGCCAAGTGCTGTACGCCGATCCCGGGTGACCCGATCGTCGGCCATCTGTCGGCTGGCAAAGGCATGGTCGTGCACCTTGAGAACTGCCGC AACATCAGTGAAATCCGCCACAACCCGGAGAAGTGCGTGCAGCTCTCCTGGGCCAAGGACATCGCGGGCGAGTTCAATGTCGAACTGCGTGTCGAACTGG AGCACCAGCGTGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCCGCCGACGGCAACATCGAGAAGATCAGCATGGACGAACGCGACGGCCGTATCAG CGTGGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCGCGTGTGATCAAGAAGCTGCGTACCCTGACCGGTGTGGTCCGCATCACCCGCATG CGTACGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCGCCAACCGCAAGGAGTCATCATGAGCAAGACCGTCATCAACAGCGACAAGGCCCCAGCTGCCATCGGCACCTACTCGCAGGCGATCAAGGCCGGCAA CACCGTGTACATGTCTGGCCAGATCCCGCTGGACCCGAAGACCATGGAGCTGGTCGAAGGCTTCGAAGCTCAGACCGTGCAAGTGTTCGAGAACCTCAAA GCCGTAGCTGAAGCCGCTGGTGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGGTGATGG GCCGCTACTTCGAGCAGCCTTACCCGGCCCGCGCCGCCATCGGCGTTGCCGCGCTGCCGAAAGGCTCCCAGGTCGAAATGGACGCCATCCTGGTCATCGA ATGATGCCCTTGGTGACGGGCACCCTGCCCGTCACCCCTCCCTCTTCTGCAAGGTTATTCCCTCATGCGTCAAGCACTGCCCCTCACATTGGCAGCCCTG
|
|
| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPGIEALAERLSTYLGPEQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVASILADMHMDHQSLMAAMLHDVIEDTGIAKEALSQQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHTVRVEFEDLGFKAMHPMRSSLIHR AVKSARGNRKEIVAKIEHSLANCLAADGIEGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSNDDEQPKGSHARARQWVKGILELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKQQRRSESISLGERLLNKVLTGFDS SLEKIPQERIQSILAEYRLELIEDLLEDIGLGNRMAYVVARRLLSAEGEQLPAPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCR NISEIRHNPEKCVQLSWAKDIAGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRTLTGVVRITRM RT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|