Pseudomonas sp. LAIL14HWK12:I5, F629_RS0114520 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00010.10_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTCGAGCGAACCCTGAGCGAACTGGTCGAGCTGGACGGGTTGACCCTGAGCTACTACCGAGGCTGGGACAAGGACCGGGAACTGCAAGAAGTACTC GCCTCCTCTCTCCTTCGCGATCAGCAGATGGGCCATACCCAAGCCGGTCCGCAGCGTGCTGATTTGCGTCTTCGTTTGGCTGCCAACAATGCAGCCGACA TCCTGTCGCGTGGTCAGCAAAAGCTGGTGGTGTGTGCATTGCGCATTGCCCAGGGCCACCTCGTTAGTCAGGCTCGCCGCGGTCATTGTATTTATCTCGT GGATGACTTGCCGTCCGAACTGGACGACCAGCATCGCCGCGCGCTGTGCCGCTTGCTTGAAGAATTACGCTGCCAGGTGTTCATCACCTGTGTAGATCAC GAATTACTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>F629_RS0114520
|gyrB
ATGAGCGAAAATCAAACGTACGACTCCTCCAGCATCAAGGTGCTGAAAGGTTTGGATGCCGTACGCAAGCGTCCCGGCATGTACATTGGCGACACCGATG ATGGTAGCGGCCTGCACCACATGGTCTTCGAGGTGGTCGACAACTCCATCGACGAAGCCCTCGCCGGCCACTGCGATGACATCACTGTCATTATCCATCC GGACGAATCCATCAGTGTGCGCGACAACGGTCGCGGCATTCCGGTCGACGTGCATAAAGAAGAAGGCGTTTCCGCAGCCGAGGTCATCATGACCGTGCTG CACGCCGGCGGTAAGTTCGACGACAACTCCTACAAGGTGTCCGGCGGCCTGCACGGCGTAGGTGTTTCGGTCGTGAACGCCCTGTCCGAGAAGCTGGTGC TGACCGTTCGCCGTAGCGGAAAAATCTGGGAACAGACTTACGTTCACGGTGTTCCTCAAGCGCCTATGGCGGTTGTCGGTGACAGTGAAACCACCGGTAC CCACATTCACTTCAAGCCTTCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGTATTCGCGAGTTGTCGTTCCTCAACTCG GGCGTGGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACGAAGGCGGCCTGCGCGCATTCGTCGAGTACCTGAACACCAACA AGACACCGGTCAACTCCCAGGTGTTCCACTTCAACGTCCAGCGTGACGATGGGGTGGGTGTTGAAGTTGCTCTGCAATGGAACGACAGCTTCAACGAAAA CCTGTTGTGCTTCACCAACAACATTCCGCAGCGTGACGGCGGTACTCACCTGGTCGGCTTCCGTTCCTCGCTGACCCGTAGCCTGAACAGCTACATCGAG CAGGAAGGCCTGGCCAAGAAGAACAAGGTGGCAACCACTGGCGACGACGCCCGTGAAGGCCTGACCGCGATCATCTCGGTGAAGGTGCCGGATCCCAAGT TCAGCTCGCAGACCAAAGACAAACTGGTCTCCTCGGAGGTGAAAACCGCCGTGGAACAAGAGATGAACAAGTACTTCGCCGACTTCCTGCTGGAGAATCC GAACGAGGCCAAGGCTGTCGTTGGCAAGATGATCGACGCTGCCCGTGCCCGTGAAGCCGCACGTAAAGCCCGTGAGATGACTCGCCGCAAAGGTGCGCTG GATATCGCCGGCCTGCCAGGCAAACTGGCGGACTGCCAGGAGAAGGACCCTGCCCTTTCCGAACTGTACCTGGTGGAGGGTGACTCCGCCGGTGGTTCGG CCAAGCAAGGCCGTAACCGTCGTACCCAGGCAATCTTGCCGCTGAAGGGTAAGATCCTCAACGTTGAGAAAGCACGTTTCGACAAGATGATCTCGTCCCA GGAAGTGGGCACGCTGATCACCGCGCTGGGCTGTGGTATCGGCCGCGAAGAGTACAACATCGACAAGCTGCGTTATCACAACATCATCATCATGACCGAT GCTGACGTTGACGGTTCGCACATCCGCACCCTGCTGCTGACCTTCTTCTTCCGTCAGCTGCCGGAGCTGGTCGAGCGCGGCTACATCTATATTGCTCAGC CACCGCTGTACAAGGTGAAGAAAGGCAAGCAGGAGCAGTACATCAAGGACGACGAGGCCATGGAAGAGTACATGACCCAGTCGGCCCTGGAAGATGCCAG CCTGCACTTGGACGAGTCGGCGCCGGCGGTTTCCGGTGTGCAGCTGGAAAGCCTGGTGAATGAGTTCCGCAGCGTGATGAAAACCCTCAAGCGCCTGTCG CGCTTGTATCCGGAAGACATCACCGAGCACTTCATCTACCTGCCGGAAGTGACTGTGGAGCAGTTGGGTGACCACGCTGTGATGCAAGCCTGGCTGGTCA AGTTCCAAGAGCGCCTGAGCAACAGCCAGAAGTCCGGCCTGGTTTACAAAGCCAGCCTGCGCGAAGACAAAGAGCGCAACGTATGGTTGCCAGAAGTGGA AGTCACCTCCCACGGCCTGGCTAGCTATGTCACCTTCAACCGGGACTTCTTCGGCAGCAATGACTACCGTACCGTAGTCAACGTTGGTGCCAAGCTATCC AGCTTGTTGGGCGAAGGTGCTTACGTTCAGCGCGGTGAGCGCCGTAAGGCAATCGTCGAGTTCAAGGAAGGCCTGGACTGGCTAATGAACGAAACCACCA AGCGCCACACCATCCAGCGCTATAAAGGGCTGGGTGAGATGAACCCTGAGCAGCTGTGGGAAACCACCATGGACCCGACCGTGCGCCGCATGCTCAAGGT CACCATCGAGGATGCGATCGCAGCCGACCAGATCTTCAACACCCTGATGGGTGATGCTGTCGAGCCGCGCCGTGACTTCATCGAAAGCAACGCGCTGTCG GTATCGAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTGTGATCCGCACACACTAAAAAGCCCGCTGATGCGGGCTTTTTAGTGTCTGAAAATCAGTAACCGCTGAGAATGTTAACGATCACACCACTGGCA ATAGCCACCAGCACGTAGTCGCCATTCACATACAACCAGCGATGGTCACGTGGTGGCGCATACAAGTGGCGTGCTTTCCAGTCAGTCACCCAGTAGCGGT CGCCACGGTAGTGTGGGTCAACCACATGCCCTCGTTGCCACTGCTGGTGAGGCACAGGCATGCCCTGCTGCGGGCGGAAGTTCGGGTTGCGGTACTCGGG TGCACGGCCGTTGTCATGGCGGCCTTGCTGCTTTGGCTGGCCATGCGGCGGGTTGCCTTGGTGCGATGGGCCATCATCATGCCGGTCGGGTGGGCCCGGT TGTGCGAAGCTGGCCAACGGTGCGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGTTTTCTTCATTTGAGAGGGGCCTCTGCCTGTTAACGCCTGGC
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD ADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLESLVNEFRSVMKTLKRLS RLYPEDITEHFIYLPEVTVEQLGDHAVMQAWLVKFQERLSNSQKSGLVYKASLREDKERNVWLPEVEVTSHGLASYVTFNRDFFGSNDYRTVVNVGAKLS SLLGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPEQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALS VSNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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