Pseudomonas sp. URIL14HWK12:I6, H043_RS0125085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00028.28_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACGCCTTTTTTCCTGCAGGTAGCGGCCTTGCAGGGCCATGATTTCTGTCTTGCTCAGAACGCCTTTTCTTTTGAGGTTGACGAGCAATTGCTCAACAC CGTCCAGTTCCACGACATCACCGGCCAGGCGCGTGATCGTCACCGCCATGCAACTGAGGTTGTCACGGTCGGCGGTAACCTTGTGGGCTTTGGCGAGCAG GCGAACTTCAGTCGCGACGCTCTCAGTGGCTGATCTGGTCATTTGGAACCCCTCGTTTTCTCTCTCGGAGCATAGCACGGTGTCGTTTCCGAGGGCATGC CAGCTAATGCTCGGCTACCTGGGAAGGTACTTACAGAAAGCGGCTTATTCGTTTGCGCCGCTGCATCAGCGTTGCTACCCGTTGCGCTGACCGAACGCGC ACACCAGCAGTTTTTTGATCACCGCCACCGGGTATTCCCTGACGTTTACGGCTAATCTGCGCACTCGCTGACGACAACAAGACAAAAACAGGAGTCACTG
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| DNA Sequence for Gene |
>H043_RS0125085
ATGCAACCGATCCGTCTCGGTCTGGTGGGCTACGGCAAAATTGCCCAGGATCAACATGTTCCGGCGATCAACGCCAATCCCGGATTTCGTCTGGTGGCGG TCGCCACGCAAGGTAAACCCTGTGCCGGGGTGGAGAACTTTCACTCGTTGAGCGAGTTGCTGGAGAACGGCCCCGAGGTGGATGCGATTGCGTTTTGTAC GCCGCCGCAAGGTCGGTTCGCACTGGTGCAGCAGGCGCTGGCCGCCGGCAAACATGTGTTGGTGGAAAAACCGCCGTGCGCCACGCTGGGTGAGGCGCTG GCCCTGGTCAGTCAAGCGCAGCAACAGGGTGTCAGTGCGTTGTTCGCCTGGCATTCGCGCTACGCCCCAGGTATCGAAGCCGCCCGCGACTGGCTCGCCG GCCGCACGCTGCAAAGCGTGCAGATCGACTGGAAGGAAGACGTGCGCAAGTGGCATCCCGGTCAGACGTGGATCTGGCAACCCGGTGGTCTGGGCGTTTT CGATCCGGGCATCAATGCCTTGTCGATTGTCACCCATTTGTTGGCGCAGCCACTGTTTGTCGAATCCGCCGAACTGCGCGTACCGGACAACTGCCAGTCG CCGATTGCCGCGTCGATCAAGATGTCCGATGCGCACAGTCTCGACGTGCAGGCCGAGTTCGATTTCGACCACGGTCACGACGAACTCTGGAGCATCGAGA TTCGCTGCGCCGAAGGGGTGCTGCGCCTGGACAACGGCGGGGCGCTGCTGAGCATCGACGGCGTGCGCCAAGTGGTGTCGGAAGAGGGCGAGTACACCGC GGTGTATCGACACTTCCGGCAACTGATTGGCGATCGGGCCAGCGACGTCGATCTGCAGCCACTGCGGCTGGTGGCTGACAGTTTCTTTGTCGGCAGCCGG GTGGCAGTCGAACCGTTTTATGACCCGGCACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGTTGAAGCGGGAGAGCTGTCGCGTGATGACAGCGAACTTGAGCGTCAGGCCTAAGCTAATGCAAAAAGGGTATTTGTTCGTGGTTTTTAAGATCGTT TAGTTTTGTCTCACGACGAATCAAACGCATCAAACCGATAGACCCCCGATTGCCATGACGGCACACGCTGAATCGATCAAAGGCTCTTCAGGTTTGATTC ACACGGGAGTGAATCATGCCGCATACCCTCGATATCACCACGCTGCCGACGCTGGACCTTTCGTTGTTCGAAGGCACCGCGCAGCAGCGTTATGAATTTC TTGAAAACCTGCGTCACGCCGCGCGTGACGTCGGCTTTTTCTATCTCACCGGCCATGGCATCGACAGCCACCTGCTCAAGCAGGTGCAGGATCACGCCCG GCAGTTCTTCGCCTTGTCCGAGCACGAAAAAAACGCCGTCGGCATGATCAATTCGCCGCATTTTCGCGGGTACAACCGTGCCGCTTCCGAGATCACCCGT
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| Amino Acid Sequence |
>galactose 1-dehydrogenase
MQPIRLGLVGYGKIAQDQHVPAINANPGFRLVAVATQGKPCAGVENFHSLSELLENGPEVDAIAFCTPPQGRFALVQQALAAGKHVLVEKPPCATLGEAL ALVSQAQQQGVSALFAWHSRYAPGIEAARDWLAGRTLQSVQIDWKEDVRKWHPGQTWIWQPGGLGVFDPGINALSIVTHLLAQPLFVESAELRVPDNCQS PIAASIKMSDAHSLDVQAEFDFDHGHDELWSIEIRCAEGVLRLDNGGALLSIDGVRQVVSEEGEYTAVYRHFRQLIGDRASDVDLQPLRLVADSFFVGSR VAVEPFYDPAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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