Pseudomonas sp. URIL14HWK12:I6, H043_RS0114605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTTCCTAATGAGCGATCAGCACTATTGGTTTTTCTTATACCGCTTTCGACCGGAGAATAGCCAGCAAGCTCTCTTTATCAAGGAACACGGCAATGGCTG GCGAAACCTCACTCACAACTCTGCTGCGCAGCATGAGCCCGCAGCTCAACGCCGGCGAATATGTGTTTTGCACCCTGCGTGACGGCCAGTTGCCGAGCGG TGTGGAGATTGTCGGCAGCTTCCGCGAGCAGGAAGGCCTGACCGTGATTCTGGAGCGCTCCCAGGCTGAACGTGCCGGGTTCGCTTTTGATTATGTGGCG GCGTGGATCACCCTCAATGTGCATTCGGCGCTCGAAGCCGTTGGCCTGACCGCCGCGTTCGCCAGCGCGCTGGGCAAGGCCGGAATCAGTTGCAACGTGA TCGCCGGTTATTACCACGACCATTTGTTTGTCGGTCAGGCCGACGCCGAGCGCGCCATGCACGTGCTGCGCGATCTGGCAGCCAACGCGGAGTAAATCTT
|
|
| DNA Sequence for Gene |
>H043_RS0114605
ATGTGGCAAAGCTATGTGAACGGCCTGCTGGTGGCCTTAGGGCTGATCATGGCGATCGGTACGCAGAACGCTTTTGTGCTGGCGCAGAGTCTGCGCCGCG AACATCACCTGCCGGTGGCGGCGCTGTGTGTGGCGTGCGATGCGCTGCTGGTGGCGGCCGGGGTGTTTGGCTTGGCCACCGTGTTGGCGCAGAACCCGAC ATTGCTCGCGGTGGCACGCTGGGGCGGCGCGGTCTTTCTGATCTGGTATGGCAGCCAGGCGCTGCGAAGGGCGTTCTCGAAACAGAGTCTGGATCAGGGT GAAAACCACACCGTACGCTCGTTGCGCGCGGTGATGCTCAGCGCGCTGGCGGTAACGTTGCTCAACCCGCACGTTTATCTCGATACGGTATTGCTGATCG GTTCACTTGGCGCGCAGCAATCAGTGCCGGGCGCTTATGTCGTGGGAGCGGCAAGTGCTTCGCTGCTGTGGTTTTTCACCCTCGCCCTTGGTGCGGCATG GCTTGCACCGTGGCTGGCGCGGCCGAGTACCTGGCGGATTCTTGATCTTCTGGTGGCAGTGATGATGTTCACGGTGGCGGGCCAATTGATTATCGCAAAC TGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTATTCCAAAAGGCTCTGGAACCTCTATCCCACACAGTTGTTGCGTGGTTAAGCCTTGACCCCGGTGCTATGATCCGAACCCTGCGCCGCAAAGAGTAA AAACTCGTCGGTGCATTTCTGGCCGCCCGTGATCGGCCTTGCGCTCACCGCAACAGACCTGATTAGGAGAATCATCATGGCTTTCGAATTGCCGCCGCTG CCTTACGCACACGATGCCCTGCAGCCGCACATTTCCAAGGAAACCCTGGAATTTCACCACGACAAGCACCACAACACCTATGTCGTGAACCTGAACAACC TGGTGCCAGACACCGAGTTCGAAGGCAAGACCCTGGAAGAGATCGTCAAGACTTCCTCGGGCGGCATCTTCAACAACGCCGCTCAGGTCTGGAACCACAC TTTCTACTGGAACTGCCTGGCGCCAAACGCCGGCGGTCAACCAACCGGCGCGCTGGCTGAAGCCATCAACGCGGCTTTCGGTTCGTTCGACAAGTTCAAG
|
|
| Amino Acid Sequence |
>amino acid transporter LysE
MWQSYVNGLLVALGLIMAIGTQNAFVLAQSLRREHHLPVAALCVACDALLVAAGVFGLATVLAQNPTLLAVARWGGAVFLIWYGSQALRRAFSKQSLDQG ENHTVRSLRAVMLSALAVTLLNPHVYLDTVLLIGSLGAQQSVPGAYVVGAASASLLWFFTLALGAAWLAPWLARPSTWRILDLLVAVMMFTVAGQLIIAN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|