Pseudomonas sp. URMO17WK12:I3, H038_RS0112340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGCCGTGACCGAGGGGCAGGTGCAGGCCAGCGATGCAACGGACCGGCCGCTGCCGGTAGGCGCCAACCAGCAGGTGCGCTGGAAGGGTGATCAGCTG CAGGCGGTGCAGCCACTCGATGCCCGTCAGCAGTTGGCCTGGCAGCGCGGCAAGCTGGTGTTTCGCGCTCAGCCGCTGGCCGAGGTGTTCGCTGCGCTGG AGCGCAGCCAGCGGCAGCGGGTGATCTTTCTCGATGACAGCGTGCGCGAGCTGAAGGTCAACGGCGTGTTTGCCCTCGATGACCCCCAGGCCGTGCTGCG CGCCATCGAAAGCGCCCTACCGGTACGCCTGGTGCGCCTGCCTGGTTTGCTACTGGTCAGCCGAGCCTGATTCACCGCCACTGTGTCGGCCGAGTTGGAA AATATTCGGTTGGCGGTTCAGAAACGTGCAAGTGCTTCGTCTTCTTCTCTGCAAATGCGACTTCTTCGCATGATCTTATGCAGAACACAGGAAATTCAGC
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| DNA Sequence for Gene |
>H038_RS0112340
ATGCGCCCGACGCGTACTCCTCTCTGGCAAGCCATCGCCACCGCCCACCTGCTGCTCGCCGCCACCAGTGCCTCGGCCCTGGAGTTCGACCTCCCGGCCC AGCCGCTCGACGCAGCGCTGACCGACTTCGCCGAGCAGGCCAACGTGCGCCTGCTCTACGATGCCAGCCTGACCCTCGGCGAGCGCCAGGCACCGGCCCT CAAGGGCGACTACTCGGTGGACGAAGGCCTGCAGCGGCTGTTGCAGGGCAGCGGCCTGAGTTACCTGATTGGCGCCGATGGGACGGTCAGCCTGGTGCCG CTGAGCAGTGACGCCAACTCGCTGCAGCTCGACGCCACCACCGTCAGCGGCCAGGCCGACGGGCGCCTGGATCTTCCGGTCGAGTACGCCGGTGGCCAGG TCGCCCGCGGCGCGCGGATCGGCATGCTGGGCAATCAGGATATACAGGATGTGCCGTTCAGCGCGGCGAGCTACACCAACGAACTGATCCAGAGTCGCCA GGCACGCAGCCTGGGTGAAGTGCTGGCCAGTGACCCGGCGATTCGCCAATCCAACGGCTTCGGCAATTTCTCCCAGGTCTTCGTGGTGCGCGGTTTCCAG CTGTACACCGACGACATCGCCTTCAATGGCCTGTACGGGATTCTGCCGCGGCAGATCATTTCCACCGAGGCGGTCGAGCGGGTCGAGGTGTTCAAGGGCG CCAATGCCTTTCTTAATGGCGTGGCGCCCGGCGGTAGCGGGGTAGGCGGTGCCATCAACGTGGTCTCCAAGCGTGCCGAGGACACCCCCACACGCAGCAT CACACTCGACTACGCCAGTGCTTCGCGCGCGGGCGGGCATGTCGATCTGGGGCGCCGTTTCGGCGAGGACAACCGTTTTGGGGCGCGCGTCAACGTGGCC AAGCGCGATGGCGAAACAGCGGTCGATGGTGAGCATTCGCATTTCAGCCTGGCCACCGTCGGCCTGGATTACCGCGGTGACCGGCTGCGCCTATCTACCG ACTTCGGCTACCAGAAACAGCGCATCAATGAAGGCCGTTCGGTGGTTTACCTGACGGCCGCGGGGCTGGGCGGCAAGGTGCCGAAGGTGCCGGACTCGGA CGCCAACTACTCTCAGCCCTGGAGCTGGTCGCAGCTCGAAGACACCTACGGCATGTTCAATGCCGAGTACGACCTCAGTGACAACTGGACGGCCTACCTG GCCGCGGGTGGCAAGTACACCCGTGAGAACGGCGTGTATTCCTCGTTGTACGTAACATCTGCGGATGGCCGTGGAGAAGTGGGGCGGCTGTATTCGCCCC TGGACCAGGAGACCTTCAGCAGCCTTGCCGGCGTGCGCGGCAGTGTGCAGACAGGGCCGGTCAGCCATCAGCTGAACATCGCTGCCAACGGCCTCTGGCA GGAAAAGCGCAACGCCTTCGAGTCCACGGCAACCACCCCGGTCAACAATCGCCTGCCTGGCAGCCTGTATGACCCGGTACCCGTCGCTGAGCCCGTGGCC AGTGTCAGCGGCGATCTGCATGATCCGCGCAAGACCGCCAAGGTGATCAATCGTAGCCTGGCGATCTCCGACACCCTTGGCTTCTTCGATGACCGCCTGC TGCTGACGCTCGGCCTGCGCCGGCAGTCCATCGGCGCCGATGCCTGGAGCGCCGGCAGCGGAGCGCGCACTGCGAACTACCAAGACAGCATCACCACGCC GGCCTACGGCCTGGTATTCAAGGCGAGCGAGGTCGTGTCGCTGTACGCCAACCGGATCGAGTCCCTTCAGCAGGGGCCGACAGCCCCCAGCGCAGCCAGT AATCGCGGCGAGATGTTCGCGCCATACCGCACCAAACAGATCGAGGCCGGCGTCAAGCTCGACTGGGGCAGCTTTGGCGGCAGCCTGGGCATCTATCGCA TTGAGCAGCCCCAGGGCGTGACCCAGAACGGCATCTACAGCGTGGACGCCGAGCAGCGTAACCGCGGTGTGGAGCTGAACCTGTTCGGCGAGCCGCTATC CGGGCTGCGCGTTCTGGCGGGCGCCACTCTGATGGATACCGAACTCAGCGGCACGGCCAACGGCGCCAATGACGGTAATCGCGCTGTGGGCGTGCCCGAA TTCCAGTACAACATCAGTGCCGACTGGGATGTACCGGGTATTGCCGGGTTGAGTTTCAACGGCCTGTTGCTACGTACCGGTGGCCAGTACTACGACACGG CCAACACCCTGAGCATCCCCGCTTGGACTCGCGTCGATCTGGGCGCCCGCTATGCCATGAAACTGGATGAAGAGCGCCTGCTCACCATGCGTGCGGGCCT TGAGAACGTTGCTGACAAGGCTTACTGGGCCTCCACCAACGGCGGCTACCTGACCCAGGGCGAGCCACGTACGCTCAAGGTATCGGCCACCCTGGATTTC TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCTGCTCATCGCGACGAGTCGTGACGCCCGAGGACTGCTGTCCTCGGGCTCGTGCCGGCTAGAAAGTCAGGCGCAGCCCCAGCGTCGCGTTGCGCGGG GTGCCGTAGTAGGCCGTGGACGTGCCGGTGTAGTACTCCTTGTCGAGCAGGTTGTTGACGTTGAGCGTCGCGCTGAGCTGTTCGGTGATGGGGTAACGGG CCATCAGGTCTACGACGGCATAGCTGTCCTGAGTGAAGCGCACGCCGTTCGGGCCGGAGCCGTCCGTATAGGCCGCGTTCTGCCAGTTCACTCCGCCGCC CAGGGTCAGGCCGTTGCCGATGTTTTCCAGCAGGTAGCTGGTGAACAGCTTGGCGGTGTTCTGCGGGACGTTGGTGTTGAGCGCGCGGCCGTCGGAGTCC TGCACGATATTGCGAGAGAAGCTGGTGCTCAGTTGCCAGTTCGGTAGCAGCTCGCCGGTCAACTCCACCTCGAAACCGCGGGTCTTGGTGCCGGATTCGG
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| Amino Acid Sequence |
>TonB-dependent receptor
MRPTRTPLWQAIATAHLLLAATSASALEFDLPAQPLDAALTDFAEQANVRLLYDASLTLGERQAPALKGDYSVDEGLQRLLQGSGLSYLIGADGTVSLVP LSSDANSLQLDATTVSGQADGRLDLPVEYAGGQVARGARIGMLGNQDIQDVPFSAASYTNELIQSRQARSLGEVLASDPAIRQSNGFGNFSQVFVVRGFQ LYTDDIAFNGLYGILPRQIISTEAVERVEVFKGANAFLNGVAPGGSGVGGAINVVSKRAEDTPTRSITLDYASASRAGGHVDLGRRFGEDNRFGARVNVA KRDGETAVDGEHSHFSLATVGLDYRGDRLRLSTDFGYQKQRINEGRSVVYLTAAGLGGKVPKVPDSDANYSQPWSWSQLEDTYGMFNAEYDLSDNWTAYL AAGGKYTRENGVYSSLYVTSADGRGEVGRLYSPLDQETFSSLAGVRGSVQTGPVSHQLNIAANGLWQEKRNAFESTATTPVNNRLPGSLYDPVPVAEPVA SVSGDLHDPRKTAKVINRSLAISDTLGFFDDRLLLTLGLRRQSIGADAWSAGSGARTANYQDSITTPAYGLVFKASEVVSLYANRIESLQQGPTAPSAAS NRGEMFAPYRTKQIEAGVKLDWGSFGGSLGIYRIEQPQGVTQNGIYSVDAEQRNRGVELNLFGEPLSGLRVLAGATLMDTELSGTANGANDGNRAVGVPE FQYNISADWDVPGIAGLSFNGLLLRTGGQYYDTANTLSIPAWTRVDLGARYAMKLDEERLLTMRAGLENVADKAYWASTNGGYLTQGEPRTLKVSATLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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