Pseudomonas sp. URMO17WK12:I3, H038_RS0119025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGGACGACGTGCTGGCCATGGCCACGCGCCCGGTGCTGGTGTCCCACGGCGGCGTCGAGGGCACCTGCCCCGGACCCCGCAACCTCAGCGACCGGCATA TCCGCGCCATCGCCGCCACCGGCGGGGTGATCGGTATCGGTTACTGGGACACGGCGGTGTGCGCCACCTCGGTAGCGGCCATCGTCAAGGCGATCCGCTA CACGGCCGATCTGGTAGGCGTGGAGCACGTGGCCCTGGGCTCGGACTTCAACGGCACCATCCACGCCCCCTTCGACGTCACCGGCCTGGCGCAACTGACC GAAGGCCTGCTCGGCGCCGGTTTCAGCCGCGCCGATATCGCCGCGATCATGGGCGGCAACGTCCAGCGCCTGCTACTCGCCAGCCTGCCTGGGAACTGAT CGACAGCCGCGCATGACGCCGGTGGCAGAGTACTTCGCCCTGCCCGCGTCTTGCTTTACACTGGCTGGCGTTCATTCCTTAATCAATCGACGAGATGACC
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| DNA Sequence for Gene |
>H038_RS0119025
GTGCTCAAAGCACTCAAAAAAATATTCGGCAAAGCCGAAAATGAGCCACACAGCTCAGTCTCCCCGAGCCTCGAAGCCACTTCGCCCCCCGCCGCCGCTC CCCGTGAGGAGCGCCAGCCGCGCCCGCCCAAAGAAGCCGCCAGCGCCGAGCAGAAGCCGCCGAGCAAACCCGCCAAGCCGCGCCGCGAACGCGTGCCCAA GCCAGTGGATACCTGGAAGCTCGAGGACTTTCAGGTCGAGCCAGCGCCCGGCAAGACCCGCTTCCATGACTTCAAGCTGTCGCCGGAGCTGATGCACGCC ATCCACGACCTCGGCTTTCCGTACTGCACGCCGATCCAGGCCGGCGTACTGGGCTATACGCTCAAAGGCCAGGACGCCATTGGCCGCGCCCAGACCGGCA CCGGCAAGACCGCCGCCTTCCTGATCTCGATCATCACCCAGCTGCAACAGACCCCGCCGCCCAAGGAACGCTACATGGGCGAGCCGCGGGCGCTGATCAT CGCGCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCCAAGGAGCTGACCAAGTACACAGGCCTCAACGTGATGAGCTTCGTCGGCGGCATGGAC TTCGACAAGCAGCTCAAGAGCCTTGAGTCGCGCTTCTGCGACATTCTGGTGGCAACGCCGGGCCGCCTGCTGGACTTCAACCAGCGCGGCGAAGTGCACC TGGACATGGTCGAGGTGATGGTGCTCGACGAAGCCGACCGCATGCTCGACATGGGCTTCATCCCCCAGGTGCGCCAGATCATCCGCCAGACGCCGATGAA AGGCGAGCGTCAGACCCTGCTGTTCTCCGCCACCTTCACCGAAGACGTGATGAACTTGGCCAAGCAGTGGACCACCAACCCGGCCATCGTCGAGATCGAG CCGGAAAACGTCGCCAGCGATACCGTCGAGCAGCACGTCTACGCCGTGGCCTCGGCGGACAAGTACAAGCTGCTCTACAACCTGATCGTGCAGAACGACT GGACCCGCGTGATGGTGTTCGCCAATCGCAAGGATGAGGTGCGCCGCATCGAGGAGCGCCTGACCCGTGATGGCGTCAGCGCCGCGCAGATGTCCGGCGA CGTGCCGCAGCAAAAGCGCATCAAGGTGCTCGAAGGCTTCCGCGCCGGGCATATCCGCGTGCTGGTGGCCACCGATGTCGCCGGCCGCGGCATCCATGTC GACGGCATCAGCCACGTGATCAACTTCACCCTGCCGGAAGACCCGGACGACTACGTGCACCGCATTGGCCGTACCGGCCGCGCAGGCACCAGCGGCACCT CGATCAGCTTCGCCGGCGAGGACGACGCCTTCGCCCTGCCACCGATCGAAGAACTGATCGGCCGCAAGATCCAGTGCGAGATGCCACCGGACGAGCTGCT CAAGGCCGTACCGCGCAAGCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGAACACGCCCAGGCGCAACGCCTGGGTGCCACGCTGCAGTTTCCGGGCATCGGCACCAAGACAGGACGTCCACCCATGAAGCTGAATGTTGATTCCAG TGACCTCAGCCGCGCCGTCCAGGCCGGCGTCCTGCAGCGCGGCCAGGACGAGGCCCTACTGGCCTTTCTGCAGCAAACGCCCACTGAGCGGCCCAGCTTC CAGCTCTCCCATATTGCCTATTACTTCGGCGCCCTGCTGATCATGGGCGCCATGGGATGGCTGCTTACCGAAGCCTGGATGAATATCGGTGATGCAGCCC TGCTGGCGATCAGCACGGCTTACCTGCTGTTGTTCCTGCTCTGCGGGCGCAGTCTGTGGCGCCGCGGCCAGCCGATTCCCGGCGGCCTGCTCGGTGCCGT GGCGGTGAGCCTGACACCGCTGGTGGTGTTCGCCGTGCAAAGGCTGCTGGGCCTCTGGCCGCTGGATGATGCGCAGTCGGACTACGTAGACTACTACCGC
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MLKALKKIFGKAENEPHSSVSPSLEATSPPAAAPREERQPRPPKEAASAEQKPPSKPAKPRRERVPKPVDTWKLEDFQVEPAPGKTRFHDFKLSPELMHA IHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAKELTKYTGLNVMSFVGGMD FDKQLKSLESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMKGERQTLLFSATFTEDVMNLAKQWTTNPAIVEIE PENVASDTVEQHVYAVASADKYKLLYNLIVQNDWTRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQQKRIKVLEGFRAGHIRVLVATDVAGRGIHV DGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFALPPIEELIGRKIQCEMPPDELLKAVPRKH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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