Pseudomonas sp. URMO17WK12:I3, H038_RS0118720
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGCATGTCGATGAACGCGAGCGCGAGCTGATCGAAGGCGAGTTCAGCAAGCTGGCCAGTGATAGCGAAACACAGCATTGGCTGCATGCCGAGCTGAAC AAACCGCTGGACCCAGCCGAGGTGGCGCGCGCCGCCAGCACGCCGGAAATGGCCGCGGAAATGTACGTGGCCAGCGTGCTGATGGTCGACGAGGAACACT TCATGGAACGCGCCTACCTGGACGAGCTGGCCCGCCACCTCAAGCTCGACCCGGCCCTCAAGGCCGAACTCGAAGCTCAGGTCCGCCAGGACCTCCAGTA ACCGTTCGAATCTGTCTGCCGGCGGCCCCTGGCTGTCCGGCAGTAGTCCCCATTCTCCCTCTGCATGTCCGGGCGCCTGTTCTACAGTAAATAGGCCCGC TCTAGCTTGCGCTGCATCCACAACGCCCCTAGAGTCCGGCAGCATGAGCTGGAGGCGCTGCCCTGCGGCGGATCAGGAATATCGGCAGATGGGGTTGAAT
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| DNA Sequence for Gene |
>H038_RS0118720
GTGAAGAACTGGACTGTTCGCCAGCGTATCCAGGCAAGTTTTGCGGTCATCATCGCCATCATGTTGTTGATGGCCGCGGCGTCGTTCGAGCGGCTGGTGC GCGTCGACAGCAGCGCCAATCGTCTGCTCGGCGATGCGATGCCCGGCATGTTCAACATCACCCAGGTGCGCAGCGTCTGGACGGAAATCTTTCATCAGAC CACCGTTCTGGTGAGCATCAAGGACCAGCATGTCTTTTCCGATGCCGAGCGCCTTTCACTGAAACAGGCCAGCGACAAGCTGGCTGAAACCATCGACGAA TACCGCCAAACAATTCGCAGCGACGCGGACCGCAATGCCCTGGACAGCTTCGAGCAGACCCGCGCGCTGTTCGCCGAGCAGCAGGCTGTCGTGCTGTCGC TCTATGAGCAGGGCCGTGCTGGCGAGGCACGCGCCAAGCTGGCTGGCGATCTGACCGATACCTGGAATGCGGGGCGCACCCACCTGACCCAGATGATCGA GCTCAACCGCAACGTGGCCTATGCCGAGGGCGAAGAGATCGTCAAGGCAGTCAATCGTGCCGAAGTGAGCATGGCAATTTCGGTGCTGCTGGCAATCGTT GCCGCGTTCGTGTGTGGCTACTTCCTCATGCAGGCCATCACCCGACCGGTGCAGCAGGTGGTCGACACCCTGCAGCAGCTGGCCAGCGGCGACCTGACCG CACGTCTGAACCTGGGGCGGCGCGACGAGTTCAACGCCATCGAAACCGGCTTCAACGGCATGGCCGAAGAGATCAAGGCGCTGGTCGCCCAGGCGCAGCG CTCGGCCGTGCAGGTCACCACCTCGGTGACCGAGATCGCCGCCACCTCCAAGCAGCAGCAGGCCACCGCCACCGAAACGGCAGCCACCACCACGGAAATT GGCGCCACCTCGCGGGAAATCGCCGCCACTTCCCGGGATCTGGTACGCACCATGACCGAGGTATCCGGCGCTGCCGAACAGACCTCGACCCTGGCCGGCG CCGGGCAGCTAGGTCTGGCGCGCATGGAAGACACCATGCACCAGGTGATGAACGCCGCCGAGCTGGTCAACGCCAAGCTGGCGATCCTCAACGAGAAGGC CGGCAACATCAATCATGTGGTCACCACCATCGTCAAAGTGGCGGACCAGACCAACCTGCTGTCGCTCAATGCCGCCATCGAGGCCGAGAAGGCCGGCGAG TACGGTCGCGGTTTTGCGGTGGTCGCCACCGAGGTGCGCCGCCTGGCGGACCAGACCGCCGTGGCCACCTACGACATCGAACAGATGGTGCGCGAGATCC AGTCCGCGGTATCCGCCGGGGTGATGGGTATGGACCGTTTCTCCGAAGAAGTACGCCGCGGTATCGCCGAGGTCGGCCAGGTCGGCGAGCAGTTGGCGCA GATCATCCATCAGGTGCAGGCCCTGGCGCCGCGCGTGCTGATGGTCAATGAAGGCATGCAGGCGCAGTCCACCGGCGCCGAGCAGATCAACCAGGCGCTG GTGCAGCTCAGCGAGGCGTCCGCGCAGACGGTCGAGTCGCTGCGCCAGGCCAGCGCCTCCATCGACGACCTCAATCTGGTGGCGAACGGTCTGCGCACCG GCGTCAGCCGCTTCAAGGTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCGGTGATCGAAGCCGGCAGGCCTTCGCCGGGGCGGCGTAGCCAGGGGCAACTGTTCCTGCTGTTCAGCATGGGCAGTGATCGCTACGCCCTGGACGTT CACGAAGTGGTCGAGGTGCTGCCGCTGCGCCGCTGCAAGCGGATTCCTGCCGCGCCTGCGTGGGTGGCCGGGCTGTTCGTGTTTCGCGGCACCCCGGTGC CGGTGATCGACCTGACCGCCCAGGCGCTCGGCCAGCCCGCCGTGGTGCGCACCAGCACCCGCCTGGTGGTGGTGCATTACCAGTCGCGCTGGCTGGGGCT GATTCTGGAACAGGCCAGCGACACCCTGCGCAGCCCTGCCGAAGCCTTCGTGGGCAGCGGTTTAGACCTGCCGACCGCCCGTTACCTGGGCCCAGTGCTC AGGTCCGAACAGGGGCTGGTGCAGTGGGTGCGGGTCGCCGATCTGCTCGACGACAGCGTGCGCGAGTTGCTGTACGCGGCAGCGGAGGGCAGCCAATGAT
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| Amino Acid Sequence |
>chemotaxis protein
MKNWTVRQRIQASFAVIIAIMLLMAAASFERLVRVDSSANRLLGDAMPGMFNITQVRSVWTEIFHQTTVLVSIKDQHVFSDAERLSLKQASDKLAETIDE YRQTIRSDADRNALDSFEQTRALFAEQQAVVLSLYEQGRAGEARAKLAGDLTDTWNAGRTHLTQMIELNRNVAYAEGEEIVKAVNRAEVSMAISVLLAIV AAFVCGYFLMQAITRPVQQVVDTLQQLASGDLTARLNLGRRDEFNAIETGFNGMAEEIKALVAQAQRSAVQVTTSVTEIAATSKQQQATATETAATTTEI GATSREIAATSRDLVRTMTEVSGAAEQTSTLAGAGQLGLARMEDTMHQVMNAAELVNAKLAILNEKAGNINHVVTTIVKVADQTNLLSLNAAIEAEKAGE YGRGFAVVATEVRRLADQTAVATYDIEQMVREIQSAVSAGVMGMDRFSEEVRRGIAEVGQVGEQLAQIIHQVQALAPRVLMVNEGMQAQSTGAEQINQAL VQLSEASAQTVESLRQASASIDDLNLVANGLRTGVSRFKV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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