Pseudomonas sp. LAIL14HWK12:I6, D907_RS0122100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00018.18_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAGAGCGAGGCGCTGCGCCAGTCCATCCCGCTGCTGGATGCCAGCGACATCGCCAGCGCCCGTGGGTATATCCAACTGCTGGAAAACGAAACCCGCCAT GCCGAAATTGGCCGCCTGAACCGCCTGTTCCACATGTCGCTGTACAGCAAGGCGCCAAATAAAAAACTGCTGCGCCTGATCGAGAACGAACTGAACGAAG AAGAACGCTTCCTGCGTTTTCATCTTTCCTCCATGGGCTTGGGCAAACTCACCCAGGATGATCACAACGCACTGGTGGATGCGGCCAGTGACAAGCTGGT CGATGAGGCGGTAACAGTGCTGGAACAGCACCTCAATAGTGGCGCGCGGGTAATCCGTAATTACCTGGATACACAGTTGGGGCGTTAATCTGTCGCCGGC TTGAGGGGGCGACGCGAGCTGATGGGTTGCAAATTGATCCTGCCCCGCCAACAATGAGACTAATTATCATTCATGTCCATTGATGCCGGCGCCCTCCTCC
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| DNA Sequence for Gene |
>D907_RS0122100
ATGCCCAGCAACGACTGCGTGCAAACGCTCTATAGTGACCACCACGGTTGGTTGCACAACTGGTTGCGCGGCAAGCTCGGCAACGCCGCCGATGCCGCAG ACCTTGCCCATGACACCTTCGTACGCCTGCTGCAGCGCCGTGAGCAGTTGCAGCTGAATGCTCCCCGGGCCTTCTTGCGCACAGTCGCGCGTGGACTGGT AATCGATCACTGGCGCCGCGAGGAGCTGCACAGGGCCTACCTGGAGGCGCTGGCCCATGTACCGGAAGCGCAGGCTCCCTCTGCAGAAACCCGCGCGCTG CTGCTGGAGTTGCTCGAGCGCATTGCACGCATGCTCGACGGCCTCAAACCCAAGGTACGACGCGCATTCCTGCTGGCCCAATGCGAGGGGCTGAAGCACC AGGCCATCGCCGAACAGATGGGAATCTCCGTCCGCACGGTAGAACGCTACATTGCCGATGCGCTCTACCACTGCTACGTGCTGCGCTACGAAGACGAGTG CTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGATGGCCGCCGCACGCCCTGATGCAAAAGTGGTCAAGCAGGCCATCCAGTGGATGCTACGGCTTCGTGAAAGCGGGCATGACCCGGCTCTACAATTG GAATGCGCACAATGGCGCAATGCTCGGCTCGAACACGAGCGAGCCTGGCAACGGCTTACACATCTGCATCAAGACCTCGACTTGCGTGCCATACCCGGTG CCGGGCTGGCGTTGCAAACCCTGGAAACCAGCCAGCAACGCCTGCACAGGCGGCAGGCGCTGAAGCTACTCGGCGGCGTTGTCATGGCGGGGTCGGCAAC ATGGCTGGCCAAAGACATCGATGCCGTCAGTGCATGGGCCTCGGACTATGCCACCGGCACGGGCGAACGACGCGCGTTCACGCTGCCCGATGGCTCATTG ATGCAACTCAATACCCACAGTGCAGTGGACCTGGCCTTCAGTGACCAACAGCGTCTGGTCCGCCTGAAGCACGGGGAGATGATGATCACCTGCGGCCCTC
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| Amino Acid Sequence |
>RNA polymerase sigma factor
MPSNDCVQTLYSDHHGWLHNWLRGKLGNAADAADLAHDTFVRLLQRREQLQLNAPRAFLRTVARGLVIDHWRREELHRAYLEALAHVPEAQAPSAETRAL LLELLERIARMLDGLKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALYHCYVLRYEDEC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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