Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGCGTGATCTCCCGCGACGAGGGCGGCTTCAAGGGCCCGGCACTGCTGCAGAACATTCTGGAAAGTGGCTTGCGCTTCGGCGAAATGGACATCTTCCACC GCCACGAGAGCATGGCCGGCCACGGCGAAGTGCTGTTCTCCATGGCCAACGCGGTCAAGCCTGGCGTCTTCGACCTGGACGACATCGACCACTTCAGCAC CCGTGCCGTCAGCTTCTTCCTCGGCTTGCCGGGCCCGCGCCATCCGAAGCAAGCCTTCGACGTGATGGTGGCTGCGGCACGCAAGCTGGCCCACGAACTG AACGGTGAGCTCAAGGACGACCAGCGCAGCGTGCTGACCGCCCAGACGATCGAGCACTACCGCCAGCGTATCGTCGAGTTCGAGCGCCGCGCGCTGACCC AGAAGCGCTGATGTGCCCAAGTGGGCAGACCTCTGTCCACCCTGTTTCAAGCGCAAGAGCAGCCAAGGGCTGCTCTTTTGCTATGCAAGAGAACCTGAAA
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DNA Sequence for Gene |
>D907_RS0124150
ATGACCGCCGAAACCCGTATCCACGAACTGCGTGCCGAGCTCGACCAGCACAACTACCGCTACTACGTGCTCGATGAGCCCAGCGTGCCGGATGCCGAAT ACGACCGCCTGTTCAACGAGCTGAAGGCGCTTGAAGCCGAGCACCCGCACCTTGTCACACCCGACTCGCCCACCCAGCGTGTCGGCGGTGCTGCCCTGGC CGCCTTTAGCCAGGTGCGCCATGAAGTCCCGATGCTCAGCCTGGGTAACGCTTTCGAAGAAACCGACCTGCGTGAGTTCGGCCGCCGCGTTGTAGAAGGC CTCGATCAGCCTGGCGCGGTCGACTACAGCTGCGAACCCAAGCTCGACGGCCTGGCCGTGAGCCTGCTGTACCGCGATGGCCAGCTGGTGCAGGGCGCTA CCCGTGGCGATGGCACCACCGGCGAAGACATCAGCGCCAACGTGCGCACGGTGCGCAACATCCCGCTCAAGCTGCAGGGTGAGGGCTGGCCGGCGGTGCT GGAGGTGCGCGGCGAGGTGTACATGAGCAAGGCCGGTTTCGACCGGCTCAATGCAGCCCAGGCCGAAGCCGGTGGCAAGACGTTCGCCAACCCGCGCAAC GCCGCCGCCGGCAGCCTGCGCCAGCTGGATTCGAAAATCACCGCCAGCCGCCCGCTGGAGTTTTGCTGCTATGGCGTTGGTCAGGTGTCTGAAAGCATCG GCGACAGCCATATTGGCATCCTTGAACAGCTCAAAGCCTGGGGGATGCCGATCAGTCGCGAGCTCAAGCATGCGGCAGGCATCGAAGAATGCCTGGCCTA CTACCGCGACATCGGCGAGCGACGTAACAGCCTGCCGTATGAAATCGATGGTGTCGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGTTGGGCTTC CGTGCGCGTGAGCCACGGTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGACGTCGAATTCCAGGTTGGCCGCACGGGGG CGGTAACGCCTGTCGCGCGCCTGAAGCCGGTCAAGGTTGCGGGGGTGACCGTGTCCAACGCCACCTTGCACAACATGGACGAAATCGCCCGCCTGGGCCT GCGCATCGGTGACACGGTAATCATTCGCCGTGCCGGTGACGTGATCCCGCAGGTGATGCAGGTGGTGCTGGAGCGTCGCCCGGAAGATGCCCGCCCGGTC GAGGTGCCGAGCGCGTGCCCGGTGTGTGGCTCGCAGGTCGAGCGTACTCAATTGGTCAAACGCAGCAAGGGCAAGGAAACCACCAGCGAAGGCGCGGTGT ACCGCTGCGTTGGCCGCCTGGCCTGTGGCGCCCAGCTCAAGCAGGCGATCATTCACTACGTGTCGCGCCGTGCCATGGATATCGATGGCCTGGGCGAAAA GAGCGTCGAGCAACTGGTGGACGAAGGCCTGATCGGCTCGCCGGCAGACCTGTACAAGCTGGAGTTCGACCAGATCGTTGGCCTGGAAGGTTTCGCCGAA GTGTCCAGCAAGAAGCTGCTGGATGCCATCGAGGCCAGCAAGCGCCCGGCCTTGTCGCGGTTCATCTACGCTTTGGGCATTCCGGATGTAGGCGAAGAGA CTGCAAAGGTGCTGGCCCGCTCGCTGGGCAGCCTGGCGCGCGTGCAGCAGGCATTGCCGCAGGTGCTCACCTACCTGCCGGACATCGGCCTGGAGGTTGC CTACGAGATCCACAACTTCTTTGAAGACGAGCACAACCGCAAGGTCATCAAGCAACTGCTCGATAGCGGCATGCAACTGCAGGACGAGGGCGAACTGGCT GCCGAATTCGCCGCCAGCACCACCCTCGCCGGCATGATTGCCAAGCTCGACATTGCCTCGGTCGGCCCGACCGGGGCCGAGAAGCTGGTGGCCAAGCTCG ACACCCTGGAAAAGATCATCGCCGCCGACGGCATCGACCTGCGCCAGGCCCTTGCGGCCAAGCAGGCGGATGCCGTGCGTGAGTTCTTCAAGAATGAAGC GAACCAGAAGCTGGCGCGGGACATCGAAGCGCAGTTGCTGGCGTTCGGCATGCACTGGACCAGCGAGAAGAAGGTGGCCGAAGGTTTGCCGCTGGCAGGC CAGACCTGGGTGCTCACCGGCACCCTGGAGCGCATGAGCCGCGACATCGCCAAGGACAAGCTGGAAAACCTGGGGGCCAAGGTGGCGGGTTCGGTGTCTG GCAAGACCCACTGCGTGGTGGCCGGGCCAGGGGCGGGGTCCAAGCTGGCCAAGGCTGCCGAGCTGGGGGTGAAGGTGCTGGACGAAGATGCCTTTGTCAC CTTCCTGGCCGGGCAGGGGGTCACGGTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AGGCCGGCGCGCGTTTCTTGTGGGGGCGGGTTTACCCGCGAAGAGGCCGGGGCTGCCACGTCAGCCCTGACAAGTCATTGAGAAATGATGACTTTTTCTC CCGCTAGAGGTTGTATCTGCCCCCAAGAACGGTACAATGGCGCCACTCGCTGTTCAGCGAGGCATGTAGTGGTGGCCCCATCGGTCCCCCCGCATTGATT ACCCGTTAACCTGGTCAGGCCCGGAAGGGAGCAGCCATAGCGGGAACATCGAGTGCCGGGGTGTGGCTGGTGGGGCCGCCTCCATTGCGCAAGTCCTTAA TTCTAAAGGACTTTTCTCGCTAAAAATCTCGAAGTGGAACAGTGCTTAGGTACACCGCAGTGGTGCACCGTAAAGGCATTCTATCTTCCATCATTCTACG TTCTCAATCCCGAAGGCGTTCAATCGCTGAACCTAAGGCATCTGCGTTGGTATCTAGAGCCTTCAGCGTAACCATCACGTTGTCATGAGCGATGGTTGAG
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Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAALAAFSQVRHEVPMLSLGNAFEETDLREFGRRVVEG LDQPGAVDYSCEPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSKAGFDRLNAAQAEAGGKTFANPRN AAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSHIGILEQLKAWGMPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPV EVPSACPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPADLYKLEFDQIVGLEGFAE VSSKKLLDAIEASKRPALSRFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIKQLLDSGMQLQDEGELA AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDTLEKIIAADGIDLRQALAAKQADAVREFFKNEANQKLARDIEAQLLAFGMHWTSEKKVAEGLPLAG QTWVLTGTLERMSRDIAKDKLENLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAGQGVTV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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