Pseudomonas sp. LAIL14HWK12:I6, D907_RS0123815 (flhF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGGTGCTGCAAGCGCTGTTGTCGGAACAGGTGCCGGTGCGCGATATTCGCAGTATTGCCGAAGCCATCGCGAACAACGCTGGCAAGAGTCAAGATACCG CCGCGCTGGTAGCGGCAGTGCGCGTCGGATTGTGTCGCGCCATCGTGCAAAGCATTGTCGGCGTTGAGTCGGAGCTGCCAGTGATTACCCTGGAGCCAAG GTTGGAACAGATTTTGCTCAATAGTCTGCAAAGGGCCGGGCAGGGTCAGGAAGAGGGTGTTCTTCTGGAGCCTAGCATGGCCGAGAAGCTGCAACGTTCG CTGATCGAAGCGGCCCAGCGCCAGGAAATGCAGGGCCAGCCGGCCATTCTTCTGGTCGCCGGCCCGATCCGCGCCATGCTGTCGCGTTTCGGTCGCCTGG CTGTACCGAATTTGCATGTTCTGGCGTATCAGGAAATACCTGACAACAAGCAAGTCACCATCGTTGCCACCGTGGGCCCTAACGGCTGAGGTAGTGGATA
|
|
| DNA Sequence for Gene |
>D907_RS0123815
|flhF
ATGCAAGTTAAGCGATTTTTCGCCGCCGATATGCGTCAGGCCATGAAACTGGTCCGTGATGAGCTGGGCGCCGATGCCGCGATCATTGGCAACCGCCGTA TTGCCGGTGGTGTCGAACTGACGGCCGCGCTGGACTACAAGCTGTCCGCCCTGGCCCCACGCGTGCCCAACGCCGAGCTGGAAGAAGAGCTGCGCAAGAC GCACACGCGCATCGCCACCGCTCAGGCCGAGCTGGACCACCGCCAGGACAGCAGTGACAACAACCGCCAATTGTTCGCCGGGCAGTCGCTGACCGCCGCC GAGCCGTTGATCGAGCCGCACGTCGATGCCCCCGAGGCGGCGACTGCTGCCCCGGCCGCTGCGCCAGTAGACCCGCGCCTGTTCGATGCCATGCGCTCCG AGCTGTCGGGCCTGCGCGAGTTGCTGGAAGTGCAGCTCGGGTCGCTGGCCTGGACCCAGTTGCAGGGCAGCAAGCCGCAGCAGGCCAACCTGTGGCGGCG CCTGCAGCGCATCGGCCTGTCCGGCCCGATTGCCCGCGAACTGCTGGACCTCACCACCGAGATCGAAGAGCCACGCCAGGCCTGGCGCATGCTGTTGGCG CACCTGGCGCGCATGATCGAAATCCCGGAAATCGAGCCGATCGAAGAGGGCGGGGTGATCGCCATGGTTGGCCCGGCCGGCATGGGCAAGACCACCACCC TGGCCAAGCTTGCCGCCCGCTACGTGCTCAAGTACGGCGCGCAGAACCTGGCGCTGGTGAGCATGGACAGCTTCCGCATCGGCGCCCAGGAGCAGCTCAA GACCCTGGGCCGCATCCTCAACGTGCCAGTGACCTACGTCGACCCGGGCCAGTCGCTGGCTGCGGCGCTGGAGCCACTGCTGCGCAAGCGCGTGGTGCTG ATCGATACCGCCGGCCTGCAGGCCAGCGACCCGGCACTGCGCATGCAGCTGGAAACCCTGGCCGGGCGTGGCATTGCTGCGAAGAATTACCTGGTGCTGG CCACCACCAGCCAGAAACAGGTGCTGACCGCCGCCTACCACAGCTACAAGCGTTGTGGCCTGGCCGGTTGCATCCTGACCAAACTGGATGAAACGGCGAG CCTCGGCGATGTGCTAAGCCTTGCCATCAGTCATGAACTGCCCGTGGCCTACCTCACCGATGGCCCGCGCATTCCTGACGACCTGCACCTGCCGCGTGGT CACCAACTGGTCTCCCGCGCAGTCAATGTGCAACAGCAGGACGAGCCCAGCGAAGAGGCCATGGCCGACATGTTCGCTGATCTCTACCACAACCCACGGC GAGCGGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCATGAAGCGTGTGCAAAGTAGCTATGCCAAGGGGTACGCAGAATTGCCCCACGTGTGGCCTGAGTCCCAGCGAGACAAGGTAAAGAACAGACATGGGTA GCATGCATCCCGTACAGGTGATCGCCGTGACCGGTGGCAAAGGTGGCGTCGGCAAGACTAACGTTTCAGTGAACTTGTCCCTGGCGCTGGCCGAGCTTGG CCGCAGGGTCATGCTGCTTGACGCCGACCTGGGCCTGGCCAACGTCGACGTGTTGCTGGGCCTTACCCCCAAACGTACCCTGGCCGATGTCATCGAAGGG CGCTGCGAGCTGCGTGACGTGATGCTGCAAGGCCCTGGCGGTGTGCGCATCGTGCCGGCGGCCTCGGGCACCCAGAGCATGGTGCATCTGGCCCCGGCCC AGCATGCGGGCCTGATCCAGGCGTTCAGCGAAATCGGCGACAATCTCGACGTGCTGGTGATCGACACGGCTGCGGGTATCGGTGACTCGGTGGTCAGCTT
|
|
| Amino Acid Sequence |
>flagellar biosynthesis regulator FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVPNAELEEELRKTHTRIATAQAELDHRQDSSDNNRQLFAGQSLTAA EPLIEPHVDAPEAATAAPAAAPVDPRLFDAMRSELSGLRELLEVQLGSLAWTQLQGSKPQQANLWRRLQRIGLSGPIARELLDLTTEIEEPRQAWRMLLA HLARMIEIPEIEPIEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVTYVDPGQSLAAALEPLLRKRVVL IDTAGLQASDPALRMQLETLAGRGIAAKNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYLTDGPRIPDDLHLPRG HQLVSRAVNVQQQDEPSEEAMADMFADLYHNPRRAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|