Pseudomonas sp. LAMO17WK12:I2, D883_RS0112330
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00008.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCGGTTTGCCAGCGTTGCGTGAACGCAGCGATAAGCCTCAGTTGCTGGATTTCCTGCTGGCGCAGGAGGCGGGCGGGCAGAGTCTACAACTCGACCCG GCGGCGCGCTCGGCGCTGCTGACCTACCCCTGGCCCGGCAACGTCCGGCAACTGCGCACGGTGTTGCGTACGCTGGCGGCGCTGTGCGACGACGGGCGGG TCGGCCTTGAGGATTTGCCCGCGTTGATTCGCCAGGCACGGCCGCAAGCAGTGGCCGAGGCCAGGCTTGCCGACTCGCCCCTGGGCGACGCCGAGCGACT CGCCCTGCTCACGGCCCTGGAGCAACAGCGCTGGCACATGACCCACACGGCGGAGCAGCTGGGTGTCAGCCGTAACACGCTGTATAGAAAGCTGCGCCGG CACGGTATTGCACGGGCTGTGCCATAGATCGGTCCTACAGCTAAAGAGTGCGATTTTCGCCCCCCTGCGCTAACCTGCCTCGATGTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>D883_RS0112330
ATGCACATTCATATTCTTGGTATCTGCGGCACCTTCATGGGTTCGATGGCGGTTCTGGCCAAAGAACTGGGCCATCACGTAACGGGCTCCGATGCCAATG TTTACCCACCCATGAGCACGCAACTCGAGGCCCAGGGCATTGAGCTGACCCAGGGTTACGACCCGGCGCAATTCGACCCGGTGCCGGACCTGGTGGTGAT CGGCAATGCCATGTCCCGGGGCAATCCGGCTGTCGAATACGTCCTCAACAAAGGCTTGCCTTACGTGTCCGGCCCACAGTGGCTGGCCGACCATGTGCTG CAAGGTCGCTGGGTATTGGCCGTTGCCGGCACCCACGGCAAGACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAACACGCGGGCATGAGCCCGGGCT TCCTGATCGGCGGCGTGCCGCAGAACTTCTCGGTGTCGGCGCGCCTGGGTGATACGCCGTTCTTCGTGATCGAAGCCGACGAGTACGACAGTGCGTTCTT CGACAAGCGTTCCAAGTTCGTCCACTACCGTCCGCGCACCGCGATCCTCAACAACCTTGAGTTCGATCACGCCGACATCTTCCCCGACCTGGCGGCCATC GAGCGGCAGTTCCACCATTTGGTGCGTACCATTCCGAGTGAAGGCCTGGTTATCCACCCGACCACCGAGCCGGCCCTGCGGCGCGTGATCGAGATGGGCT GCTGGACCCCGGTGCAAACCACCGGCGCCGGCGGGCAGTGGCAGGTCAAGTTGCTCAGTGAAGACGGTTCCCGGTTTGAAGTGCTGTTTGAAGGCGAGGC CCAAGGCATCGTCGAGTGGGACATGACTGGCCAGCACAACGTCGCCAATGCCCTTGTGACCCTGGCGGCCGCGCGGCATGTGGGCGTGGTGCCGTCCATG GGCATTGCTGCGTTGAGCGCATTCAAGAGCGTGAAGCGCCGTATGGAAAAGGTCGCCGACGTGAATGGGATTACCATCTACGACGACTTTGCCCACCACC CAACGGCCATTGCTACCACCCTCGACGGCCTGCGCAAACGTGTTGGCGATGCCCCGATCATTGCGATTGTCGAGCCGCGTTCAAACTCCATGAAGCTCGG CGCACACCGCGACGGCCTGCCGGAAAGCGTTAACGATGCCGACCAGGTGGTGTGGTATGCCCCGGCCAACCTGGGCTGGGACCTGCCGGCGATTGCGGCG CAGTGCACGGTGCCGTCGAAAGTCTGTGACTCCATCGAGGGCATCATTGCGTTCGTCAAGCACCAGGCCAAGCCTGGCACCCATGTGGTGGTGATGAGCA ACGGCGGCTTCGGCGGCTTGCACGGCAAACTGGCCGAGGCCCTGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGGCCCGGAGCGCGTTACCCTGGCGATGACCGGCGCATCCGGCGCACCCTATGGCTTGCGCCTGCTCGATTGCCTGGTGCGCGAAGACCGTGAAGTGCA CTTTCTGATCTCCAAGGCCGCGCAGTTGGTGATGGCCACCGAGACTGATGTCGCGCTGCCAGCCAAGGTGCAGATGATGCAAGCCTTCCTTACCGAGTAC ACCGGTGCGGCGGCGGGGCAGATCAAGGTCTACGGCAAGGAAGACTGGATGTCGCCGGTGGCTTCGGGCTCCGGTGCGCCGGCGGCAATGGTCGTGGTGC CGTGCTCCACCGGTACGCTATCGGCGATTGCCACCGGCGCTTGCAACAACCTGATCGAACGCGCCGCCGACGTGACGTTGAAGGAGCGCCGCCAGTTGAT CCTGGTGCCGCGTGAGGCGCCGTACTCGAGCATTCATCTGGAGCACATGCTCAAGCTGTCGAACCTGGGGGTGACCATCCTGCCGGCGTCGCCCGGCTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIELTQGYDPAQFDPVPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGDTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTIPSEGLVIHPTTEPALRRVIEMGCWTPVQTTGAGGQWQVKLLSEDGSRFEVLFEGEAQGIVEWDMTGQHNVANALVTLAAARHVGVVPSM GIAALSAFKSVKRRMEKVADVNGITIYDDFAHHPTAIATTLDGLRKRVGDAPIIAIVEPRSNSMKLGAHRDGLPESVNDADQVVWYAPANLGWDLPAIAA QCTVPSKVCDSIEGIIAFVKHQAKPGTHVVVMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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