Pseudomonas sp. URMO17WK12:I12, D882_RS0115490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTGAGTTGACAGACCTGCAGCTCACGCATGGCGCTGGCAAGCGCGGCGATCTGCTCGGGTGTGGCGTCGGTCAGCCACTTGGGCAAGGTCTTTTGAAGC GTTTCGGCACTGTCCAGATCGCCAGTCATGTCGATCAAAGCCGATAGCTGATCTGAATCCGTGAATGGCTTGACAGCCGGGTTGACGGGGTCCTTGTCTG ACATTCGCAATGTTCCTTATTGCAAGCGGGAGAGTCCCTAAAGTAGCCCCTTCAATCGTCAATGAATAATCAGAAAACCTCGTGTATTCAGTTGCTTAAG CAGCAGCATTTTCAATGCGTCGCATCAATATGTACCGCACACCTCCAGCTCTTTTCGGGTAAGGCCGTCCGGTTCACTGCGGCGGCTTATTACTTATCGA TCTAAAACTCCCACGGTCCCACCGGGTCAGTTTCTGAGTACCCGCCGTTTTGGCCGGGTATCGATTGACCCTCCCCAACGGAAAAACCGGTAAGGATTTT
|
|
| DNA Sequence for Gene |
>D882_RS0115490
ATGTGCGGATTAGCTGGCGAGTTACGCTTTGATCATCAACCTGCGGACCTCGCGGCCGTTGAACGAATCACCCATCACCTGGCCCCTCGCGGCCCCGATG CGTGGGGTTTCCATGCCCAAGGGCCGATTGCGCTTGGTCATCGTCGGCTGAAAATCATGGACCTGTCGGACGGTTCGGCGCAGCCGATGGTCGACAATCA ATTGGGCTTGTCCCTGGCCTTCAACGGCGCGATCTACAACTTTCCGGAATTGCGCACCGAGCTCGAAAGCCTTGGTTATGCCTTCTATTCCGGCGGTGAC ACCGAAGTACTGCTCAAGGGCTATCACGCTTGGGGCGAAGCCTTGCTCCCCAAGCTCAACGGCATGTTTGCCTTCGCTATCTGGGAGCGCGATGCCCAGC GCCTGTTCATCGCCCGCGACCGTCTCGGCGTCAAGCCGCTGTACCTGTCGCGCACCGGCCAGCGCCTGCGCTTTGCCTCGGCACTGCCGGCGTTGCTCAA GGGTGGCGACATCAGCCCGATACTCGACCCGGTGGCGCTCAATCATTACCTGAACTTCCACGCCGTGGTCCCGGCACCGCGCACCTTGCTGGCCGGCATT GAAAAACTGCCGCCAGCCACCTGGATGCGCATCGAAGCCGATGGCCGCACCGAGCAGAAAACCTGGTGGACCCTGCCCTACGGCCCTCGCGCCGACGAAA TGAACCTGACCCTGGAAGACTGGTGCGACCGGGTGCTCGACAGCACCCGAGATGCGGTGGCGATTCGTCAACGGGCGGCGGTCGATGTCGGCGTACTGCT ATCGGGCGGCGTCGACTCGAGTTTGCTGGTCGGGCTGTTGCGTGAAGTCGGCGTGGAAAACCTGTCGACCTTCTCCATCGGTTTTCAGGATGCCGGCGGC GAACGCGGCGACGAGTTCCAGTATTCGGACCTGATCGCCAAGCACTACGGCACTCAGCACCATCAATTGCGCATCGACGAAAAAGAGATCATCGAGCAAC TGCCTGCTGCGTTCCGCGCCATGAGCGAGCCGATGGTCAGTCATGACTGCATCGCTTTTTATCTGCTGTCCCGCGAAGTGGCCAAACATTGCAAAGTGGT CCAGAGCGGCCAGGGCGCGGACGAGTTGTTCGCCGGGTATCACTGGTATCCGCAAGTCGACGGCGCCGCCGATCCGTACGCCGCCTATCGCGAGGCATTT TTCGACCGCAGCTATGACGATTACGCCGCCACGGTGCAGCCGAAATGGCTGACAGCGAATGACGCCGCCGGTGACTTCGTGAAGGAACATTTCGCACAGC CCGGCGCCGATGCGGCGGTGGACAAAGCCCTGCGTCTGGACAGCACGGTGATGCTGGTGGACGACCCGGTCAAACGCGTCGACAACATGACCATGGCCTG GGGCCTGGAAGCACGCACGCCGTTTCTCGACTATCGACTGGTGGAGTTGTCGGCCCGTGTGCCGGGCAAATTCAAACTGCCGGACGGCGGCAAGCAAGTG CTCAAGGAAGCGGCGCGCCTGGTGATTCCGGGTGAAGTCATCGACCGCAAGAAGGGTTACTTCCCGGTGCCCGGCCTCAAGCATTTGCAGGGCGATACGC TGAACTGGGTGCGCGAACTGCTGCTCGATCCGAGTCAGGATCGCGGTCTGTTCAACCCGGCGATGCTCGACCGTTTGCTGACTGACCCGCAGGGTCAATT GACTCCGCTGCGCGGCTCCAAGCTGTGGCAACTGGCGGCCCTGAACCTGTGGCTCAGCGAGCAAGGAATCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGATGAAACCCCACGCCACGGCTTATAGCCAACGCTTGTTGCGCGGCCAGACACCGTCTTATGAACGCTTGCAGGCGCGTCTCGCCGAAGACGGCAGCG AACTGAGTGCGGAACCGATTGCCGTGCATTGCGGCTGGGGCCGGTTGCTGATCGGGCACACTTTCCCCGATCCTGCCAGCCTCGCCCAGGAGTTGCTCAA TGAGCAACCGGGCGAGCGCGACATTGCTTTATACGTTGCCGCGCCGCAGCAGATTCTGGGGCTGGAGCCGGCGCAACTTTTTCTCGACCCGTCCGACACC TTGCGTTTGTGGTTCAGCGATTACCGTCAAGCCACTCGTGTGTTTCGCGGCTTCCGCATTCGCCGGGCACAAAGCGATGCGGATTGGCAGGCGATCAATC AGTTGTATCAGGCGCGCGGCATGTTGCCGATCGATGCAAACCTGCTGACCCCGCGACACTTGGGCGGACCGGTGTATTGGCTGGCCGAGGACGAAGACAG
|
|
| Amino Acid Sequence |
>asparagine synthase
MCGLAGELRFDHQPADLAAVERITHHLAPRGPDAWGFHAQGPIALGHRRLKIMDLSDGSAQPMVDNQLGLSLAFNGAIYNFPELRTELESLGYAFYSGGD TEVLLKGYHAWGEALLPKLNGMFAFAIWERDAQRLFIARDRLGVKPLYLSRTGQRLRFASALPALLKGGDISPILDPVALNHYLNFHAVVPAPRTLLAGI EKLPPATWMRIEADGRTEQKTWWTLPYGPRADEMNLTLEDWCDRVLDSTRDAVAIRQRAAVDVGVLLSGGVDSSLLVGLLREVGVENLSTFSIGFQDAGG ERGDEFQYSDLIAKHYGTQHHQLRIDEKEIIEQLPAAFRAMSEPMVSHDCIAFYLLSREVAKHCKVVQSGQGADELFAGYHWYPQVDGAADPYAAYREAF FDRSYDDYAATVQPKWLTANDAAGDFVKEHFAQPGADAAVDKALRLDSTVMLVDDPVKRVDNMTMAWGLEARTPFLDYRLVELSARVPGKFKLPDGGKQV LKEAARLVIPGEVIDRKKGYFPVPGLKHLQGDTLNWVRELLLDPSQDRGLFNPAMLDRLLTDPQGQLTPLRGSKLWQLAALNLWLSEQGI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|