Strain | Pseudomonas sp. URMO17WK12:I12 D882DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCGGCGTGCGCCAGATTCAGGTGCAGCCAGAGGAATTCTTGGCTGTCGTCGGGTTGTTGCAGGTATTGCAGCGCTTTGGCCGAATCGATCTCGCGACCAC GTTCACCGGGGCGAAAACTGAAACCGTAGAGCAGGCCGAACAGGTCCGTGTCGCGATGGCTTTGGTCGATGCTGTGGTTCATGAGTGCTCGCAAGGGGGC GCTATCGCTCTATGTAGCAGCTGGCGAAGCCTGCGGCTGCAGGGTCGAGTTGTGGCGGGTTTACAGGTTCACCTGAGCCGCATCATCGCAAGGATTCTTG ACGGTTGTGTGACGGATCAATGAAGGCCAAATAGTGGCTCTACCGACGGTCGGATTGGATTAAAGAACCGCTCTGGCACGCCGATCTCGCTTACGTTAAC GTGCGCGCCTTTGGCCACGAGCCAAGTCGCAGACAGGGACGTCCGGACACCTTTCACGCCATGTTGCGGCGTGTCTCACCCCTGTCATGAGTATCACTCG
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DNA Sequence for Gene |
>D882_RS0114380
ATGCTGCAAAAATCCCTGAGAGCACAAATCCTCGCCTTGTTGAGCGGCAGCCTGCTGGCGATGTTGCTGATCGCTTTGGCTTGCTTTCATTTCCTGTCCA GCGGTGTTCAGAGCTACGCGAACCTGATCGACGGCCCGCTGCACACTTCCCAGTTGATCGATGAAGCCAACCTGCAATTCAAGGTGCAGGTTCAGGAATG GAAAAACGTCCTGCTGCGCGGCAAACAACCGGCGGACCTGGACAAATACTGGAAGCAATTCGAAGACCGTCAGCGCGATGTGCAAAGCATCCTCGGTGAA CTGGCCGGGCAGAAGGGCATCGAGCCGCAACTCAAGACCCGCATCGAACGCCTGCGTGATGAACACCGCTTGCTGGGCACTGCCTATCAAAAGGGTCGCG ATGCCTACGTCGCAGCCGGTGCCGACCCGACTGCTGGCGATACCGCTGTGAAAGGCGTGGACCGCGCGGCCAGTGATCAGATGAGCGAACTGGTTGTCGA ACTGCGCAAACAGGGCGCCGAGCAGTCGAAGCTAATCAGTGCCGACGCTGACCGCACCGTGTTGCTGGGGATCATCGTGATGCTCGCCTCGGGCTTGCTG ATCGGTCTGTTGAGCCTGTGGCTGGTCAACCGCAATCTGGTTGAACCGATTCGCAAACTGATCGACTACGTGGCGCAACTCAGCCAGGGCAAATTCGCCG ATCGCGTGGCCAGCACCCGTCAGGATGAGCTGGGCAAACTGGCGGTCGCCGCCAATACCCTGCGCGATTTCCTCGCCGACACCTTCAGCCATTTGCAGCG CAGCGCCAAGGACCTCGACAGCGCCAGCGGCGAACTGAACGCCATCGCCAGCCAGATGGCGGGTGGCACCAACGAGCAGTTCAACCGCACTGATCAGGTG GCCACGGCGATGAATGAAATGTCCGCGACCGCGCAAGAAGTTGCGCGTCACGCCGCCGACGCCGCACGCGCTGCCGACGACGCTGACCAGTCCGCGCAGC AGGGCGAAAAAGTCATGCAGGGCACCATCCATACCATCACCCAGATGCGCGGTGAAATCGCCAACACCGCCACGGTCATTCGTCAGCTGGAAACCGACAG CGGCCGCATCGGCAAGGTGCTGGAAGTGATTCGCGGCATCGCCGAACAGACCAACCTGCTGGCGCTCAACGCCGCCATCGAAGCGGCCCGTGCCGGTGAA GCCGGGCGCGGTTTTGCGGTGGTCGCCGATGAAGTGCGCAGCCTGGCCCAGCGCACGGCGGCGTCGATCATCGAGATCAACCAGATCATTCAGACCGTGC AAACCGGCGCGGTGGACGCGGCGCAGGCGATTGAAAGCGGGCAGTCACGCAGTGAAGAAAGCGTGCAGCAAGTGACCGAGGCCGGCGCCATGCTGGAGCG GATCACCCAGGCCGTCGAAGCGATTCGCGACATGAACCGCCAGATCGCCACCGCTGCCGAAGAGCAGACCTCGGTGGCCGAGGACATCTCGCGCAACCTT ACCGAGATCACCAGCATCGCCAGTACCAATCTGGACAACGTGCAACGCACCGAAGCGGCAAGCCACAACCTGCACGGGGTGTCGTCGCAGTTGAATGAAG TGACGGCGCGTTTGAGCGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GACCGACGGCTGTGTACCGGCTCGCTTACCGAGTCGGTACACAGTCGATCTCAAGTGCGGCCGGGCCATGTCGATGTGGGAGATACCCAAATCCCACACT GGATACATCCCATGGTCAGCATCACCTCTGTCTCGATCAACCAGACCCTCACCACCTCCACCAGCAAAACCGCGATCAGCGATCCCGCCGCCGACACCTC CGTCACCGCCACCACCGAGACGCCTTCCGACGACAGCAAAGTGGCCGCCGGTGGCGCTCCCGCGTCGAGCGACAGCAGTTCCAGCAGCAGCGAAGAATCC GATGCGGTGAAAGCCTTGCGCAAGCAAATCGCCGAACTGCAAAAGCAGATGCAGGAACAACAGCAACAGCTGCAAGCAGCCCAGGCAAAACAGGAAGATG CCGACGCCAAAGCCGCTGATGTCGCGGCGGCTCAGTCGCAGGTGGCGACCACCTCAGGTTCGTTGCAGACAGCAACGGCGGCGTTGTTGCAGGCGTTGCA
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Amino Acid Sequence |
>chemotaxis protein
MLQKSLRAQILALLSGSLLAMLLIALACFHFLSSGVQSYANLIDGPLHTSQLIDEANLQFKVQVQEWKNVLLRGKQPADLDKYWKQFEDRQRDVQSILGE LAGQKGIEPQLKTRIERLRDEHRLLGTAYQKGRDAYVAAGADPTAGDTAVKGVDRAASDQMSELVVELRKQGAEQSKLISADADRTVLLGIIVMLASGLL IGLLSLWLVNRNLVEPIRKLIDYVAQLSQGKFADRVASTRQDELGKLAVAANTLRDFLADTFSHLQRSAKDLDSASGELNAIASQMAGGTNEQFNRTDQV ATAMNEMSATAQEVARHAADAARAADDADQSAQQGEKVMQGTIHTITQMRGEIANTATVIRQLETDSGRIGKVLEVIRGIAEQTNLLALNAAIEAARAGE AGRGFAVVADEVRSLAQRTAASIIEINQIIQTVQTGAVDAAQAIESGQSRSEESVQQVTEAGAMLERITQAVEAIRDMNRQIATAAEEQTSVAEDISRNL TEITSIASTNLDNVQRTEAASHNLHGVSSQLNEVTARLSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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