Pseudomonas chlororaphis O6, PchlO6_6176 (tssJ2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGCTCAAGCAAAGCATCGGCGGCCTGCAGCAGAGCCTGCGCACCCGCAGCGAGCTGAAAAACGAACTGCGCCTGGCCCTGACCACGGCCCAGGGCGGTA GCAAGAACCCGCTCAAGTTTGCCGTGGACGCCAGCGAAGCGTTGGGCATCCTGCTGCAGGGCAACAAGCCCGGCCAGTTGCCGGCCGAGCAGGCGATCTC CCGCGCGTTCCGCGATCTGCAGGCGCACCAGGTGGCGCTGCTGACCGCCAGCCGCGCAGCTGTACGTGGCACCCTCGAGCATTTTTCGCCGCAGCAACTG ACCCTGCGTTTCGAGCGCGACAACAAGCCGTTGCTGGCCACCTCCGGCAGCCGCTGGAGAGCCTACAACCGCTACCACCAGGCCCTGCGCCAGGACGATG ACTGGAGCGAACGCCTGCTGGCCCGCGACTTCGCCCAGGCCTACGAAGAACAGATCCGCCTGATCTCCACCCTTCACACCGAACACCAAGGATGATGCGC
DNA Sequence for Gene
>PchlO6_6176 |tssJ2
ATGTCTCGCTGCTCGACCCTGTTACTCAAGACGCTGGCTGCGCTGACCGCCCTGGCGTTGCTCGCCGGCTGCTCGTCGCTGTCGCCGTACTCGACCATGA CCAAGCTCAACCTCAAGCTGACCGCCAGCGACCAGCTCAACCCGGACCTCAACGGTCGTCCGTCGCCGATCGTGGTGCGGCTGATCGAACTCAAGCATCC GGTGGCCTTCGAGAACGCCGATTTCTTCAGCCTCTACGAGCGCGCCAAGGAGTCCCTGGCCCCGGACATGGTGGCCAGCGAAGAACTGGAACTGCGCCCG GGTGAAACCGTGGAACTCAAGCTCAGCGTCGAAGAAGGCAGCCGCTACGTCGGCGTGCTGGCGGCCTACCGCGACCTGTCGGAAACCCAGTGGCGCTATG TGGTGCAGCTCACTCCGGTGGAGCTGACCGAAGCCGACCTGACCCTCGACCAGGCCGGTATCCGCACCAGCAACGCAACGCTCGCCAAGGCGGATAAGTA A
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCATGAATGTGCATAAAGTCATTTGGCAGGAAGGCATGTTGCTGCGCCCGCAGCACTTCCAGCACAACGATCGCTACTACGACTACCAGATGAAAACCCG CACCCAGTTGCTGGGCAGCTATTCCTGGGGTTTCCTGAGCCTGGAGATCGACCTGCAGTTCCTCAACATGGGCAAGCTGGTGATCAGCCAGGCTTCCGGC ATCCTGCCCGACGGCAGCCTGTTCGAGCTGGGTGGCAACACCGAGCCGCTGGCCCTCGACGTACCGCCGAACACCGGCAACACCCCGGTCTACCTGGCCT TGCCGCTGGTGACCGGCAACCACATCGAGGCGCGCCGTCCGGAGCAGTCCGATGTGCTGGCACGCTACACCACCTACGAGGCGGAAGTGGCCGACTCCAA CGCCGGCGACGATTCCAGCAGCCAGGTCAGCTGCGCCCGGCCGGACTTCCGCCTGCTGCTCGGCGAGCAACAGAGCGACCAGGCCTATGTGAAGCTCAAG
Amino Acid Sequence
>type VI secretion protein
MSRCSTLLLKTLAALTALALLAGCSSLSPYSTMTKLNLKLTASDQLNPDLNGRPSPIVVRLIELKHPVAFENADFFSLYERAKESLAPDMVASEELELRP GETVELKLSVEEGSRYVGVLAAYRDLSETQWRYVVQLTPVELTEADLTLDQAGIRTSNATLAKADK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site