Pseudomonas chlororaphis O6, PchlO6_6155 (spoT)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTGGGCTGAATAGCACTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCGCTTGTAGCGCGTCGGAAAGCTTGGTTAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAA GACTGTCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCAACCGGCGGCAAAGAGCCGAAAGTAGCAT GGGAAAACGACAAGCCTACCGTCGTCGCCCTGCGCGAAATCGCTGAAGGCCTGATCGACTACGCAGCTATCGCCGAAGCCGAAATCGTTGAAGATGAACC GCTTTTTGCTGCTTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGATCACAGCCTACGGCAGGAGTCATC
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| DNA Sequence for Gene |
>PchlO6_6155
|spoT
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTATCTCGGCACGGACCAGGTCAATCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ATGACGGTCAGCGCCGTCGCAGCGGCGAGGCGTACGTCACGCACCCATTAGCGGTCGCAAACATTCTCGCCGACATGCATATGGACCATCAGAGCCTGAT GGCGGCCATGCTGCATGACGTGATCGAAGACACCGGTATCGCCAAAGAAGCGCTGCAAGCGCAGTTCGGTGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAAGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCGCGCGACATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCCGGTGAAAAACGCCGGCGGATCGCCAAGGAAACCCTGGAGATCTATGC GCCCATCGCCAACCGCCTGGGCATGCACAGCATCCGCATCGAATTCGAAGACCTCGGTTTCAAGGCCATGCACCCGATGCGTTCCGCGCGGATCTACCAG GCGGTCAAGCGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAATCCCTGAGCCACTGCCTGGCCATCGACGGCATCCAGGGAGAAGTCA GCGGCCGCCAGAAACACTTGTACGGCATCTATAAAAAGATGCGCGGCAAACGCCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCAGGTCGCTTCAAGGATTACATCGCGATTCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGCTGTTCGGCATGCACGGCGTTCCGATCGAGATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCACTGGCTGTACAAATCCAGCGGCGACGAGCAGCCAAAGGGCACTCATGCCCGGGCTCGTCAGTGGGTCAAGGGCGTGCTGGAGATGCA GCAACGCGCCGGCAATTCCCTGGAGTTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCGAAGGGCCGGATCATGGAG CTGCCCAAAGGCTCCACCGCAGTGGACTTCGCCTACGCGGTGCACACCGACGTGGGCAACAGCTGCATCGCCTGTCGTATCAATCGCCGCCTGGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCCACCGTGGAAATCGTCAGCGCCCCGGGCGCACGCCCCAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC TCGCACCCACATTCGCCATGCGCTGAAACTGCAACGCCGCTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAGGTGCTCAACGGTTTCGACAGC GCGCTGGAAAAGATCCCCGCCGAACGCGTGCAAGCGATGCTCACCGAGTATCGCCTGGAACTGATCGAAGACCTGCTGGAAGACATCGGCCTGGGCAACC GCATGGCCTATGTGGTCGCCCGCCGCCTGCTCGGCGAAGGCGAACAGCTGCCAAGCCCGGAAGGTCCGCTGGCCATTCGCGGTACCGAAGGCCTGGTCCT GAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCCGCGGGCAAGGGGATGGTGGTGCACCTGGACAACTGCCGCAAT ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTTTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGCGTCGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGGGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCTCGTGTGATCAAGAAACTGCGCGCCCTGACCGGGGTCATTCGCATCACTCGCATGCGT GCATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGCTATACAGCCCGCCCATTACAAGGAGTCATTCATGACCAAGACCGTTATCACCAGCGACAAGGCACCCGCCGCGATCGGCACCTATTCCCAGGCGA TCAAGGCAGGCAACACCGTCTACATGTCCGGCCAGATCCCGCTCGATCCAAAGACCATGGAACTGGTGGAAGGCTTCGAAGCCCAGACCGTCCAGGTATT CGAGAACCTCAAGTCCGTGGCCGAGGCCGCCGGTGGTTCGTTCAAGGACATCGTCAAGCTCAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTC AACGAGATCATGGGCAAGTACTTCCAGCAGCCTTACCCTGCCCGCGCCGCCATCGGCGTTGCCGCCCTGCCAAAAGGCGCGCAGGTTGAAATGGATGCCA TCCTGGTCATCGAGTAACACGTCCGGCGCGGCTACCCAGGCCGCGCCGTCTTCGTTCTGAAAGGATTTCCTCATGCGCAAAGCGCTAGCCCTCTCGTTGT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGTDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALEKIPAERVQAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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