Pseudomonas chlororaphis O6, PchlO6_5838 (pilH)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACCAGTACGGGCAGAAAATCGATTCGCTGTGGCGATGGTAGAGCAGATATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAG ACGATTCGCCGCACGGCAGAAACGCTGTTGAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGTCCCTGGCCAAGATCGCCGACAACC ACCCGGACATCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAGTCCACGCCGGT GATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTTTTTGACCAAGCCTTTCAGCAAGGAAGAGCTG CTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAGCACATTGAGGTCCGGCCAGCGGGCCGCACGCCTATTCGTATGGGGAAGACC
|
|
| DNA Sequence for Gene |
>PchlO6_5838
|pilH
ATGGCTCGTATTCTGATCGTCGATGACTCGCCGACTGAAATGTACAAACTGACCGGCATGCTGGAAAAGCATGGCCATGAAGTCCTGAAGGCCGAAAACG GCGCCGACGGCGTGGCCCTGGCGCGCCAGGAAAAGCCTGACGCGGTCTTGATGGACATCGTCATGCCCGGCCTCAATGGCTTCCAGGCCACCCGTCAGTT GACCAAGGACGCGGAAACCAGCCATATCCCGGTGATCATCATCACCACCAAGGATCAGGAAACCGACAAGGTCTGGGGCACTCGCCAGGGCGCCAAGGAT TACCTGACCAAGCCGGTCGACGAAGACACCCTGATCAAGACCCTGAACAACGTCCTGGCCGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGCCCGCGCCATGGCCGAGTCGCAAACCGCCTTCGAACTGCTGTTCGAGATCGACCAGCGCTGCCGCCTGCTGGCGGCCGACCTGCCCTCCCAGGAAAC CCGCCAGCACGGCTGGAGCGGGATCGGCTTTCGCATCGGCGAGCACTGGTATGTGGCGCCGATGGGCGAAGTCAGCGAAGTCCTGCACGAGCCGCGTTAT ACGTTGCTGCCCGGGGTCAAGCCTTGGGTCAAGGGCGTGGCCAACCTGCGCGGACGGCTACTGCCGATCATGGACCTGTGCGGCTTCTTCGGTCATGAGC TGTCGGCGCTGCGCAAGCAGCGGCGGGTGCTGGTGGTCGAGCACAAGGAAGTGTTCGCCGGCTTGATGGTGGACGAAGTGGCCGGGATGCAGCATTTCGA GCAGAGCAGCCTGAAGATGGCTGCCAGCGGTAGCGAACAGGGCGCCATCACGCCGTACCTGCGCGGGTATTTCCCCTGCGAGCAGGTCTGGTGGGTATTC
|
|
| Amino Acid Sequence |
>chemotaxis protein CheY
MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLTKDAETSHIPVIIITTKDQETDKVWGTRQGAKD YLTKPVDEDTLIKTLNNVLAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|