Pseudomonas chlororaphis O6, PchlO6_5772 (choX)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCATGGGCCCGACGGTGTGGGAACTGGAGGGGCCGATGCCGATTTTGAACAGGTCGAAAACACTGATAGCCATTACTGCGAAACTCCTCGATGAGCACA CGCCGGGCGCCCAAACGCCCGGTGGCGAAGCTGCTACGCTCAAGCAGTAATCCGCCGAGATACGCGCATCATCAGGCTTTTGCAGTGTCGTTCGACGTCT CACACCGACTCACTCATGCCCACCAACGCCGTGGCCCGCCGACCTCCGGTTCTGGCCGTTTTTTTGCGGTTCAGATGGGCAAAAAGTGCTGAAAAAAGCT GTAAGCGACCTTACCGACACTGGATGCGACCCTCCCTGTACTGGATACGACGCACCCTGTAGGCGTCAGATTTTCACTGGTACATGATCAGTCTCGACTC GATTGCAAGGCACTGTGGTAGAGCTGTCCCACTCGCCCCAACCGCAACACTTATAAGTGCGGTCAGACACACCGCCAGAAAACACCCAGGAGTCCATCCC
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| DNA Sequence for Gene |
>PchlO6_5772
|choX
ATGAAAGGTTCCCCGTCGTTGTTGTTGGCCGCCATGCTGAGTCTGCCGCTTCTGGCGCACGCCGCAGAACCGGCGCAATGCAGCACCGTAAACTTCTCCG ATGTCGGCTGGACCGACATCACCGTCACCACCGCGACCACCAGCGTGGTTCTCGAGGCACTTGGCTACAAGACCAAGACCACGATGATTTCCGTGCCGGT GACCTACAAGTCCCTGGCCGACGGCAAGAACATGGACGTGTTCCTCGGCAACTGGATGCCGACCATGGAAAACGACATCAAGCCCTATCGCGATGCCGGC ACTGTGGAAACCATCCGCGCCAACCTGGAGAACGCCAAGTACACCCTGGCGGTCCCGGAAGAGCTGTACAACAAGGGCCTGAAGGATTTCGCCGACATCG CCAAGTTCAAGAAAGAACTGGACGGCAAGATCTACGGTATCGAGCCGGGTAACGACGGCAACCGCATGATCCAGAGCATGATCGACAAGAACGCCTTCGG CCTGAAAGACGCCGGCTTCAAGGTGGTCGAGTCCAGCGAGGCGGGCATGCTGTCCCAGGTCGAGCGCGCGCAACGGCGCAGCACCGCGGTGGTGTTCCTG GGCTGGGAACCGCACCCGATGAACACCCGTTTCAAGATGAAGTACCTGACCGGCGGCGACGAGTTCTTCGGCCCCAACTACGGCCAGGCGACCATCTACA CCAACACCCGCAAGGGCTACGCCGAGGAATGCAGCAACGTTGGTCAGTTGCTGAAGAATCTGTCGTTCACCCTGAATATGGAAAGCACCCTGATGGGTAA CGTCCTGGACGACAAGATGAAGCCCGAGGCGGCCGCCAAGGCCTGGCTGAAGAAAAACCCCGAGGTACTCGATACCTGGCTCGCTGGCGTGACCACCATT GACGGAAAACCAGGCCTGGAGGCCGTGAAAGCCAAGCTTGCGCAAGCTGCTAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTAGGTCGCTTACGCCGGGTGGGTTCGCCCGCCCGGGCTGTTTATTCCTTGCATGCGGACGTTCAATACCATGCTCATTGATCAGAAAATCCCTTTAGGC CAGTACATCGCTGCCTTCGTTGAATGGTTGACGCAACACGGCGCCAACACATTCGATGCGATCGCATCGACCCTGGAAACGATGATCCACGGCGTGACGT TTGCGCTGACCTGGTTCAACCCGCTGGCCTTGATCGGCCTGATTGCCTTGCTGGCGCACATCATTCAACGCAAATGGGGCCTGACGGCCTTTGTCGTGCT GTCCTTCCTGCTGATTCTCAATCTGGGTTACTGGCAGGAAACCATGGAAACCCTGGCCCAGGTGCTGTTCGCCACCCTGGTCTGCGTGCTCATTGGCGTG CCGTTGGGCATCGTCGCCGCGCACAAGCCGATGTTCTACACCATGATGCGTCCGGTGCTCGATCTGATGCAGACCGTACCGACCTTCGTTTACCTCATTC
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| Amino Acid Sequence |
>glycine/betaine ABC transporter substrate-binding protein
MKGSPSLLLAAMLSLPLLAHAAEPAQCSTVNFSDVGWTDITVTTATTSVVLEALGYKTKTTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYRDAG TVETIRANLENAKYTLAVPEELYNKGLKDFADIAKFKKELDGKIYGIEPGNDGNRMIQSMIDKNAFGLKDAGFKVVESSEAGMLSQVERAQRRSTAVVFL GWEPHPMNTRFKMKYLTGGDEFFGPNYGQATIYTNTRKGYAEECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPEAAAKAWLKKNPEVLDTWLAGVTTI DGKPGLEAVKAKLAQAAN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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