Pseudomonas chlororaphis O6, PchlO6_5158
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAGCAGGGGCGCCTCGAGTTCACGCTGGATCTGGCTGACCTGGGTCTGTGCCAGTCCGACCAGCCGCTGTTCGATGACTTGCTCGAATTGAGCCTGGG TTCGCTGTTGCACCATCTCCTGGGTCCGGGCACCGGCGAACAGGGCGTACAGCACCAGGGCAACGACCACGCTGAGGACGATGGCACCGGCCAGGGCGGC CACGGAAAACTGGATCGACTTGAATTTCATAAGGGCTCCGGACGCAGGAATGACGTCTGCCCCGCTGTATCGGCAAGGCCCTCGCCGACCATGAGCGAGG ATCGGAAAAATGACTGTTTTGTAGGCTGACATGTCGCAAATGGACAGCTGCCGGGCGTTGTCGGGCGCGGCGGGGAGGGTTCTGTGAATTTTTTCCTACG CTGCCCTGTAGCTGAAAACAGCGTGCTACACGTCCGTTGTATCTGGCGTCGATACACAACTGCGCCTAGGATACGCGCCATGTTTTCAGGGAGCGTTTTC
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| DNA Sequence for Gene |
>PchlO6_5158
ATGAGTAAGAAGCAGGTTTTGGGTGCACTCACCGCTGCGTTGCTGCTGTCGGGTTGCCAGTCGGTCAACACCACCAGCGGTGGCGCTGTCGGCGTCGATC GCAAGCAGTACATGTTCAGCATGCTGTCGAGCGATGAGGTCAACCAGTCCTACGCGCAGTCCTATCAGCAGAAGATCGGCGAAGCGAACAGCAAGAACGT GCTGGACAAGTCCAGCGCCAATGCCAAGCGCATCCAGGCGATCGCCAACCGGCTGATTGCCCAGGCCCCGGTTTTCCGCCCGGATTCCGCGCAGTGGAAC TGGGAAGTCAACCTGATCAAGAGCGATGAACTCAACGCCAACTGCGGCCCTGGCGGCAAGATCATTTTCTACAGCGGCCTGATCGACAAGCTGCAACTGA CCGACGATGAAATCGCCGCGGTCATGGGCCATGAAATCGCCCACGCCTTGCGCGAGCACGGTCGTGAAGCGATGTCCAAGGCCTACGGGGTCAGCGCGCT GAAGCAGATCGCCCTGATCGCCGGCGCACCGCAGGAAGCGGTCGCCGTGGGCGACAACGGGGTCAACCTGTTGATGACCCTGCCCAACAGCCGCGGCAAT GAAAACGAAGCCGACCTGATCGGCCTGGAACTGGCGGCCCGCGCCGGCTACAACCCGAACGCGGCCATCACCCTGTGGAACAAGATGAGCAAGGCCTCGG AAGGCGCGCCACCTGAATTCCTCAGTACTCACCCGGCGTCCGGCAGTCGTATTTCCTCGTTGGAAGCGGCGATTCCGAAGGTGATGCCGTTGTACCAGCA GGCCAAGAGGCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGTCAGGCGTCGTTGTTGACGACAGTGTCGTGAACAAGCCGGCCCCTGCAAAAAAAGCCCCGACTGGTTCGGGGCTTTTTTGTGCTCGCAGGTTTGCCT GGTGATGGGGCGCTTACAACCAGCCGCTGCTCTGCATGGCCTTGTACACCGCGACAATGGCCAGGATGAAGAACGCCGAGGCCGCGAGGCGACGGATCAG GGTCAGGGGCAGTTTCTCCGCCGCGAAATTGCCGGCCAGTACCACCGGGACGTTGGCGATCAGCATGCCGGCGGTGGTGCCGATGATCACCAGCCACAGT TCAGGGTATTGCGCCGCGAGCATGACGGTGGCGATCTGGGTCTTGTCGCCGATTTCAGCGAGGAAGAATGCGATCAGCGTGGTCAGGAAGGGGCCGAACT TGCGGGCGGTGCTGGCTTCGTCGTCGTCCATCTTGTCTGGCACCAGGGTCCAGAGCGCGGTCGCGGTAAAGCTCGCGGCGAGGATCCAGTGCAAGGTCGC
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| Amino Acid Sequence |
>peptidase M48
MSKKQVLGALTAALLLSGCQSVNTTSGGAVGVDRKQYMFSMLSSDEVNQSYAQSYQQKIGEANSKNVLDKSSANAKRIQAIANRLIAQAPVFRPDSAQWN WEVNLIKSDELNANCGPGGKIIFYSGLIDKLQLTDDEIAAVMGHEIAHALREHGREAMSKAYGVSALKQIALIAGAPQEAVAVGDNGVNLLMTLPNSRGN ENEADLIGLELAARAGYNPNAAITLWNKMSKASEGAPPEFLSTHPASGSRISSLEAAIPKVMPLYQQAKRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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