Pseudomonas chlororaphis O6, PchlO6_4951
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGATCGACCTGAAAGCATTCACCTCCCCCTGTAGGAGCGAGCTTGCTCGCGATAAACCCGAGGGCGCCGCGATGCTTCGGATACACCGCGTCATCGTTGA CGACCATCGCGAGCAAGCTCGCTCCTACAGGGGGGGCGAGGCGAAAGAAGCCTGAGATAGAGCCATCACGACCGGTAAATAGGTCCTAGGTAGGGGCATG ACGCTGCACCATGGCTGTGCAATACTCGGCGCCGTTCAAAAATGACAAACGGCAAAAAATCCAGGTAATGCCACTCCGCAAAACCCGAAGATACCGAGAT TTCTCTCTGAATTTAGCTGTTTATAGAGTGAAAAAGCCTGCCGTCAGCTTTTTATACTGCACGCCCCACTGATCTTGCAGGATTTGTCCTACAAGACGTG TCGGCCCACAAGGTCGATCCGATCTGGCAGGTACGGGTTATCCGTCCGCGCCTTACAGACTCGGTGGCTCACATCCAATAACAAGATGAGGTTGTACCCT
|
|
| DNA Sequence for Gene |
>PchlO6_4951
ATGCCAGTTGGCAACCACCTGCCCCAAGGCGAGACCGCTCAAGGCGGCCCGCTGAAACGCGAACTCGGCGAACGGCATATTCGCTTGATGGCGCTCGGCG CCTGTATCGGTGTCGGCCTGTTCCTCGGTTCGGCCAAGGCCATTGAAATGGCCGGCCCGGCCATCATGCTGTCCTACATCCTCGGCGGCCTGGCGATCCT GGTGATCATGCGCGCCCTCGGCGAGATGGCCGTGCATAACCCGGTCGCGGGTTCCTTCAGCCGTTACGCGCAAGACTACCTGGGCCCGCTGGCGGGCTTC CTCACCGGCTGGAACTACTGGTTCCTGTGGCTGGTGACCTGCGTCGCGGAAATCACCGCGGTGGCGGTGTACATGGGCATCTGGTTCCCCGATGTGCCGC GCTGGATCTGGGCCCTGGCGGCCCTGGTGAGCATGGGCTCGATCAACCTGATCGCGGTCAAGGCCTTCGGTGAGTTCGAGTTCTGGTTCGCCCTGATCAA GATCGTCACCATCATCGCCATGGTCATCGGTGGCATCGGCATCATCGCCTTCGGTTTCGGCAATGACGGCGTGGCGCTGGGCATTTCCAACCTGTGGACC CATGGCGGTTTCATGCCCAACGGCATGACCGGCGTGCTGATGTCGCTGCAGATGGTGATGTTCGCCTACCTGGGCGTGGAAATGATTGGCCTCACCGCCG GTGAGGCGAAGAACCCGCAGAAGACCATTCCCAACGCCATCGGCTCGGTGTTCTGGCGCATCCTGCTGTTCTATGTGGGCGCGCTGTTCGTGATCCTGTC GATCTACCCCTGGAACGAAATCGGCACCCAGGGCAGCCCGTTCGTGATGACCTTCGAGCGCCTGGGCATCAAGACCGCCGCCGGCATCATCAACTTCGTG GTGATCACCGCCGCGCTGTCGTCCTGCAACGGCGGCATCTTCAGCACCGGGCGCATGCTCTACAGCCTGGCACAGAATGGCCAGGCCCCGGCCGGTTTCG CCAAGACCTCGAACAACGGCGTACCGCGTCGCGCGTTGCTGCTGTCGATCTTCGCCTTGCTGCTGGGTGTGCTGCTCAACTACCTGGTGCCGGAGAAGGT GTTCGTCTGGGTGACCTCCATCGCCACCTTCGGCGCGATCTGGACCTGGGTGATGATCCTCCTGGCCCAGCTCAAGTTCCGCAAAGGCCTGAGCGCCTCG GAACGTGCCGGCCTGAAATACCGCATGTGGCTGTACCCGATCAGTTCCTACCTGGCCCTGGCGTTCCTGGTGCTGGTGGTAGGGCTGATGGCCTACTTCC CGGACACCCGCGTGGCGCTGTATGTGGGCCCGGCGTTCCTGGTGCTGCTGACGGTGCTGTTCTACCTGTTCAAGCTGCAACCGAACAATGCCCAGCAGGG TGCGGTGCGTTCGGCGTCGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCCATCAGGCGATAACACAAAAAGCCCCGGTCATTGACCGGGGCTTTTTTATGCGGGCGATATTGCTGCGGTTCCAGGTTTTAGTGTTGTGACCATCCG TTCACCGCAGCCCGATCGCCGGTGCGCGGTCAGCTCCCCAACAGCCCGGTGGTGTCCGCATCGAACGCCGCTTTCGCTCGCTGGGCGGCGGGCGCCAGCA AGGCCAGCAGCGCGGCCTCGCTGTACAGCTTGGTGCTCGCCAGGTGCTTGGGCGTCGGCTCGATCGGGATCAGCACGTCTTCGTCGCTGGCGTGCAGCCA GATCGCCACCACCTGCAGCGCCGAGACAAACAACACCCGCAGTTCGAAGGTCCGGCCTTTGAGGTGCGGCGCCTGTTCCGCCAGGTTCAGCGCGTTGACC GTGGCCGACGCCAGGGCGCCGTGGTTCAGGGACGAGAACTCGACCTGGCCAGCGATCTCGGCCAGTTGGGCGTCGGCAATCGACACCCCGTCGCTGAACA
|
|
| Amino Acid Sequence |
>alanine glycine permease
MPVGNHLPQGETAQGGPLKRELGERHIRLMALGACIGVGLFLGSAKAIEMAGPAIMLSYILGGLAILVIMRALGEMAVHNPVAGSFSRYAQDYLGPLAGF LTGWNYWFLWLVTCVAEITAVAVYMGIWFPDVPRWIWALAALVSMGSINLIAVKAFGEFEFWFALIKIVTIIAMVIGGIGIIAFGFGNDGVALGISNLWT HGGFMPNGMTGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFV VITAALSSCNGGIFSTGRMLYSLAQNGQAPAGFAKTSNNGVPRRALLLSIFALLLGVLLNYLVPEKVFVWVTSIATFGAIWTWVMILLAQLKFRKGLSAS ERAGLKYRMWLYPISSYLALAFLVLVVGLMAYFPDTRVALYVGPAFLVLLTVLFYLFKLQPNNAQQGAVRSAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|