Pseudomonas chlororaphis O6, PchlO6_4647
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACACAATCCTGTCTACCAAAGCCCCTACCCTTCCCTGTAAGTCACGTCCTACGGGGCTTGCAGAGCATCGCGCAAAATCTTCAACGCCTGCGATCAAC TCGAGGCGGCAAAAACACGCCAAACGGGGTGAAAAAAAATCTTCGCCGGCCAAAGCCTTGTAAACCCTCGCTCCGCCGCGATAACGCCCCTCGCCGGCCG AATCGTGAGCCACTTCGTCGCACCACAGCGGCAAAAAAGTCCCTATAATGCGGCCTTAAAACGGGCCTGCAATATTCCCTTACAGGGATAAACAGCCAAT CCGAAGCCAGCGCAGAAATCGACCCGGTCCTCTGTGCCCATAACCGCCTCGGAACTCCCGTACATATTTTTGTTTATTGCCTGCGTTAGCTGCTGCAACA AACGATTCCTTAAGATCCAACGCGGCCAGTTCGGCCGTGTGAAAAGCCAACCATCAGTTTTCACACGGGCATCTGGCCCTCACGCAGGAGACGACACGTC
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| DNA Sequence for Gene |
>PchlO6_4647
ATGCTGAGCTGGGACGAATTCGACAAAGAAGAAGGCGAAGTCGCCGTTAAAGGCGCCAACGCCGGTCATGCTGCCGAAGCTGCCATGGACAAACTCGACA GCGCCGGTGGTGCCGCCGCTCTCGAAGCCCGCGCCGTAACCGCCAACGATTCTGCTGCCGTTGCCCGTGCCAAGGCCTCTCTGGACCAGCTCGACATCGC CGAAGGCCTGGCCGAGTTGGAAGGTGCTTCCGCCCGTGTCGCCGTCGATGAAAAGCGCATGATCAACTGCCGCGCCGACCTCAACCAGCTCGTGCCATTC AAATATGACTGGGCCTGGCAGAAGTACCTGGACGGTTGCGCAAACCACTGGATGCCGCAAGAAGTCAACATGACCGCCGACATCGCCCTCTGGAAAAACC CGGAAGGCCTGACCGACGACGAGCGCCGCATCGTGATGCGCAACCTGGGCTTCTTCTCCACCGCCGACTCCCTGGTTGCCAACAACCTGGTGCTGGCCGT GTACCGCCTGATCACCAACCCGGAATGCCGCCAGTACATCCTGCGCCAGGCGTTCGAAGAGGCGATCCACACCCACGCCTACCAGTACTGCATCGAATCG CTGGCCATGGATGAAGGCGAGATCTTCAACATGTACCACGAGATTCCATCGGTCGCGAAGAAAGCGGCCTGGGGCCTGAAGTACACCCGTTCGATCTCCG ATCCGAAGTTCGAAACCGGCACCGTCGACACCGACAAAGAGCTGCTGCGCAACCTGATCGCCTACTACTGCGTTCTGGAAGGCATCTTCTTCTACTGCGG CTTTACCCAGATCCTGTCCATGGGCCGCCGCAACAAAATGACCGGCGTCGCCGAGCAGTTCCAGTACATCCTGCGCGACGAATCCATGCACCTGAACTTC GGTATCGACGTGATCAACCAGATCAAGATCGAAAACCCGCACCTGTGGGATGCCGAGATGAAGGAAGAAGCCACCCAGATGATCCTCCAGGGCACCCAAC TGGAAATCGAATACGCTCGCGACACCATGCCGCGCGGCGTACTGGGCATGAACGCAGCGATGATGGAGGACTACCTCAAGTTCATCGCCAACCGTCGCCT GTCGCAGATCGGCCTGAAAGAAGAATACCCAGGCACCACCAACCCGTTCCCATGGATGAGCGAAATCATGGACTTGAAGAAAGAGAAGAACTTCTTCGAG ACTCGGGTGATCGAGTATCAGACTGGCGGCGCGCTGAGCTGGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCCGAGCTCCTGCCCTGTGCCGATCTCGATCTGAATCGGCACAACGAAAGATAAAAAAGCCCTGACTTGCTCAGGGCTTTTTTATTGAGGGTCCGACTC CCCCCGCTTCCAGGCCAATCATCCGGCCCGGATCGATATCTGCTCAATCGGCAGAAGCCAGGACTCCACGAATTTCCTTCTTCACCGCCTCGAAATCCGC CGCTGCGCGGGGATCGTCCAGCAGCCGGGCCGCCAACACCGCGGCGCTTATCTTTCCGCCCTCCAGGTCGCTGGGGAAATGCACGCCGGCAATGACCCGG CTGTCGGCATTGATCTGTGCGCGGCTGAACAGCTCGCTGCGTTTCTCCGGCAGCGCCATGCTCAGCAAGGTGGCATTGAGATACCCATTCATTGAGTGAC CGCTGGGGTAGGAATCGCCCTCGGGTGGCGGCAATACCGGCTTCACCAGTGCCGAGGCTTCGTATGGGCGCGGCCGACCATAGCTGTGCTTGGCCGGCAT
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit beta
MLSWDEFDKEEGEVAVKGANAGHAAEAAMDKLDSAGGAAALEARAVTANDSAAVARAKASLDQLDIAEGLAELEGASARVAVDEKRMINCRADLNQLVPF KYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIES LAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNF GIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFE TRVIEYQTGGALSWD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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