Pseudomonas chlororaphis O6, PchlO6_4030 (liuA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCAGATGCCCAGCCGGTCGCCGGTCCTGAGCCCCAGGGCCAGCAGCGCCCGGGCATGCAGATCGACGGTTTCGGCCAGCTGCTGCCAGCTGTAGCGCAG CTGCTGATGACGCACCACCAGGGCTTCGCCCCGAGGGTATGACGCCACCGTGCGATCGAACGCCTGACCGATGGTCAGCGCCAGCAAGGCTTTGTCCTGG GTGCCGCGAGTGTAGCTGCGCCCCGGCGCGAGTGCGGGTTGATCCATGATGACCCCCTATTGTCTTTATTGTAGGAGCGAGGCTTGCCCGCGATTGGAGC GCCGCGATGTCGCTATACGACCGCGTGATCCTTCATCGCCAGCAAGCTCGGCTCCTACAGATTCGCGCAAGTTGACGTTTACGTAAAGGGTGATTGACAG CCACCTGTCGCAGGCTTACGTTAACGTAAAGGTGAGAGCCGGATCACCCGCTCTCTACAGCCCGACTCCCTTACATAAAAACAAGTTTGAAGGTGCCCCC
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| DNA Sequence for Gene |
>PchlO6_4030
|liuA
ATGAGCTATCCGACCCTGAACTTTGCCCTCGGCGAAACCATCGACATGCTCCGCGACCAGGTGCAGGCCTTCGTCAAGGCCGAGCTGGCGCCACGGGCGG CACAGATCGACATCGACAACCTGTTCCCCGCCGACATGTGGCGCAAGTTCGGCGACATGGGCCTCTTGGGCATCACCGTGCCGGAAGAATACGGCGGTGC CGGCCTGGGTTACCTGGCCCACGTGGTGGCCATGGAAGAAATCAGCCGTGGCTCGGCCTCGGTCGCCCTCTCCTACGGCGCCCATTCCAACCTCTGCGTC AACCAGATCAACCGCAACGGCAACCACGCACAGAAAAGCCAATACCTGCCCAAGCTGATCAGCGGCGAACACATCGGCGCCCTGGCCATGAGCGAACCCA ATGCCGGCTCCGACGTGGTGTCGATGAAGCTGCGCGCCGACAAGCGCGGCGACCACTACGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGCCCCGA CGCCAACACCTACGTGATCTACGCCAAGACCGACCTGGAAAAGGGTCCGCACGGCATCACCGCGTTCATCGTCGAGCGCGACTGGAAAGGCTTCAGCCGC AGCAACAAGTTCGACAAGCTGGGCATGCGCGGCTCGAACACCTGCGAGCTGTTTTTCGATGACGTGCAAGTGCCGGAAGAAAACATCCTCGGCGTGCTCA ATGGCGGCGTGAAGGTACTGATGAGCGGCCTGGACTACGAGCGCGTGGTGCTCTCCGGCGGCCCGACCGGGATCATGCAGGCCTGCATGGACCTGGTGGT GCCCTACATCCACGACCGCAAGCAGTTCGGCCAGAGCATCGGCGAGTTCCAGCTGATCCAGGGCAAGGTCGCCGACATGTACACCCAGCTCAACGCCAGC CGCGCCTACCTGTATGCCGTGGCCCAGGCCTGCGAACGTGGCGAGACCACGCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAACGCGCCACCC AGATGGCCCTGGACGCGATCCAGATCCTCGGCGGCAACGGCTACATCAACGAATTCCCCGCCGGCCGCCTGCTGCGCGACGCCAAGCTGTATGAAATCGG CGCCGGCACCAGCGAGATCCGCCGCATGCTGATCGGTCGCGAACTCTTTAACGAGACGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGCAGCTGCAAGTTGCGAGCTACAAGCGGCAAGCCATAGCTGCCGTAACGCCGATTTACTCTTGCAGCTTGAAGCTTGTCGCTTCGAGCTGCGCTGGGA GCCCCAATGATTCTGAAGTCTCAGCTCAACCCGAAATCACCAGAGTTCGCGCAGAACGCTGCCAGCATGCTGGCCCAGGTCGATGCCCTGCACACCCTGC TCGCCCAGGTCCAGCAAGGCGGTGGCGCCAAGGCCCAGGAACGGCATACCTCGCGCGGCAAGCTGCTGCCGCGCGAGCGCATCAACCGCCTGCTCGACCC GGGCTCGCCCTTCCTCGAAGTCAGCCAGCTGGCGGCGTATGAGGTGTATGGCGAAGACGTGCCGGCCGCCGGGGTGATTGCCGGCATCGGCCGGGTGGAA GGTGTCGAATGCATGATCGTGGCCAACGACGCCACGGTGAAAGGCGGCTCCTACTACCCGCTGACCGTGAAAAAACACCTGCGCGCCCAGGCCATCGCCC
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPTLNFALGETIDMLRDQVQAFVKAELAPRAAQIDIDNLFPADMWRKFGDMGLLGITVPEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGNHAQKSQYLPKLISGEHIGALAMSEPNAGSDVVSMKLRADKRGDHYVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDDVQVPEENILGVLNGGVKVLMSGLDYERVVLSGGPTGIMQACMDLVVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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