Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCTGGCTCACGGTCTGTCGGCGGCAGCACTCTTTATCCTGTGCGGCCAGCTGTACGAACGCACCCACACCCGCGACATGCGTGAAATGGGTGGCCTGTGG TCGAAGATCGCCTACCTGCCAGCCATCAGCCTGTTCTTCGCAGCAGCCTCGCTGGGCTTGCCGGCGACCGGTAACTTCGTCGGCGAATTCCTGATCCTGA TCGGTACCTTCGCCAGCGCACCATGGGTCACCGTGCTCGCGACTTCCGGCCTGGTGTTCGGTTCGGTCTACTCGCTGATCATGATTCACCGCGCCTACTT CGGCCCGGCCAAGTCGGACGCGGTCCTGCACGGCATGGACGCTCGCGAACTGATCATGGTGGTCGGCCTGGCGGCGCTGCTGATCTACATCGGCATCTAC CCGCAACCGTTCCTCGATACCTCTGCCGCCACGATGAGTGGCGTGCAGCAATGGCTCGGCACCGCCTTCACTCAACTCGCTTCGGCCCGGTAAGAGCGCT
|
|
DNA Sequence for Gene |
>PchlO6_4001
|nuoN
ATGGACTTTACGATTCAACACTTTATCGCGCTTGCGCCGCTGTTGATCACCAGCCTCACCATCATTGTGGTGATGCTGGCTATCGCCTGGCGTCGCAACC ATTCGCAAACCTTCCTGCTGTCGGTCGCCGGTCTGAACCTGGCGTTGCTGTCGATCCTGCCGGCCCTGAAAGTCACCCCTCTGGCGGTGACTCCATTGCT GCAGATCGACCAGTTCGCCTGCCTGTACATGGCGCTGATCCTGGTGGCCACCCTGGCCTGCGTCACCCTCGCCCACGCCTACCTGGGCGACGGCGGCACC GGTTACCCGGGCAACCGCGAAGAGCTGTACCTGCTGATCCTGATGGCCGCCGCCGGCGGCCTGGTCCTGGTCAGCGCGCAACACCTGGCCGGCTTGTTCA TCGGCCTGGAACTGCTCTCGGTACCGGTCTACGGCCTGGTGGCTTATGCCTTCTTCAACAAGCGTTCGCTGGAAGCCGGCATCAAGTACATGGTGCTGTC GGCCGCCGGTTCCGCGTTCCTGCTGTTCGGCATGGCCCTGCTCTACGCCGAAGCCGGCAGCCTGAGCTTCAACGGCATCGGTCAGGCCCTGGCCGCGACC GGCCTGCCTAGCCCGATGGCCCAACTGGGCCTGGGCATGATGCTGATCGGCCTGGCGTTCAAGCTGTCGCTGGTACCCTTCCACCTGTGGACCCCGGACG TCTACGAAGGGGCTCCAGCGCCTGTGGCGGCCTTCCTGGCCACCGCGAGCAAGGTGGCGGTATTCGCGGTGATGGTGCGTCTGTTCCAGATCTCGCCGGT AGCCAGCAGCGGTGTCCTGAACACCGTGCTGACCCTGATCGCGATTGCCTCGATCCTGTTCGGCAACCTGCTGGCGCTGACCCAGAGCAACCTCAAGCGT CTGCTGGGTTACTCGTCCATCGCCCACTTCGGTTACCTGCTGATCGCCCTGGTGGCGAGCAAGGGCCTGGCGATGGAGGCCATCGGCGTCTACCTGGTCA CCTACGTGATCACCAGCCTCGGCGCCTTCGGCGTGATCACCCTGATGTCCTCGCCTTACAAGGGTCGCGATGCGGATGCCCTGTACGAGTACCGCGGCCT GTTCTGGCGTCGTCCGTACCTGACCGCCGTACTGACCGTGATGATGCTGTCCCTGGCCGGTATCCCGCTGACCGCGGGCTTCATCGGCAAGTTCTACATC ATTGCCACCGGTGTCGAAGCGCACCAATGGTGGCTGGTCGGTTCCCTGGTCCTGGGCAGCGCCATCGGCGTGTTCTACTACCTGCGCGTCATGGTCACCC TGTACCTGATCGAGCCGAACCTGCGCCGCGTCGACGCCCAACTGCACTGGGAACAGAAAGCCGGCGGCGTGATGCTGCTGGCCATCGCGGTCCTGGCGTT CTTCCTCGGCGTCTACCCACAACCGCTGCTGATCCTGGTTCAGCAATCCGGTCTGGCGGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TCGCTCAAGAACGATCCGCAGCAAAACAAGACGGCGCCTTCGGGCGCCGTTTTGTTTTCCAAAGAAAAACCACCCTGCCCTTCCTCCTGCCATCTGAAAG GAATTGCCTTTCAGGCTTTAAAGACGCGTCCTACGTCTCATCCTGATTGCCAAGTCTAAGGTCATTAAAAGGCGACGAGCGCCATGCGCAACGCCTTGAC CTCTCGACCCATTTAACCAAAAATATACGCAGATTACGTACAGATCATGGACGCACTTTTTATTGAGCTGCCCCCGTTCCAACGCCATCGACAGGACTAC CTGGACGACGAGCTTTTTCGTAGCTTGCAGCTTGAGTTGCTGAAAGCCCCCGAAGCCGGAGATCTCATCGAGGGAACCGGTGGCTGCGCAAGATCCGCTT TGTCGATGAGCGACGGCACAAGGGCAAACGCGGCGGGATCCGGGTGATTTATTACTGGTGGTCCGGAGACGCCCAATTCTGGCTCTTCACCCTTTACGCA
|
|
Amino Acid Sequence |
>NADH:ubiquinone oxidoreductase subunit N
MDFTIQHFIALAPLLITSLTIIVVMLAIAWRRNHSQTFLLSVAGLNLALLSILPALKVTPLAVTPLLQIDQFACLYMALILVATLACVTLAHAYLGDGGT GYPGNREELYLLILMAAAGGLVLVSAQHLAGLFIGLELLSVPVYGLVAYAFFNKRSLEAGIKYMVLSAAGSAFLLFGMALLYAEAGSLSFNGIGQALAAT GLPSPMAQLGLGMMLIGLAFKLSLVPFHLWTPDVYEGAPAPVAAFLATASKVAVFAVMVRLFQISPVASSGVLNTVLTLIAIASILFGNLLALTQSNLKR LLGYSSIAHFGYLLIALVASKGLAMEAIGVYLVTYVITSLGAFGVITLMSSPYKGRDADALYEYRGLFWRRPYLTAVLTVMMLSLAGIPLTAGFIGKFYI IATGVEAHQWWLVGSLVLGSAIGVFYYLRVMVTLYLIEPNLRRVDAQLHWEQKAGGVMLLAIAVLAFFLGVYPQPLLILVQQSGLAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|