Pseudomonas chlororaphis O6, PchlO6_3913
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAATGCCCTCAGGCCGTGGCGGCGCCTGCCTTAGTGTTGGCTCTGGGTCGATCCCGACCGTCACCCGAGAGGAACACCATGCCGGCACCGACTGCCTCGC TGCGGTTTTCATCCGTCACCAGGCTGTATCGCCTGGCGCGCCTCGCGCTGTGGTTGGCGCTGGGCGGGCTGCTGGTTGCCTGTGGCGACCAGAGCGCGCC GCCATCGGCGGCGGCCGTGCAACAACTGCCCGACGATTCGGCGCTGGCGCGGATCTACGACAGCAGTTGCAAGCTCTGCCACACCAACCCGGCGTCCGGC GCGCCGCTGACCGGCGATGTCCAGGCCTGGCGCCCGCGCATTGCCCAGGGCGCCGACACCCTGCTGGACCACAGCATCAACGGTTACAACGGCATGCCGC CGATGGGCCTGTGCATGCAGTGTTCCGAGGCGCAGTTCCTCGCCCTGATCCGCTTCATGTCCGCACAAGACCTCCAATAACCCGGCACAGGGACACAGGC
|
|
| DNA Sequence for Gene |
>PchlO6_3913
ATGACCATGCACCTCACACGACGTCAGTTGCTGCAACGCAGCGCAGTCGTCGGGACGTTCGGCGCGCTGACCAGCAACCCGCTGCTGGCCGAGCTGGCGC GGGCGCCACGGCTGATTCCCTGGCGCAACTGGTCCGGCGCGCAAAGCTGCCTGCCCCTGGCGCGGCTGGCGCCCAAGGACCTGGATGAGCTGGTGCAGGT GATTCGCCAGACCCCGGGCAAGATCCGTCCGGTGGGCTCGGGGCATTCCTTCAGCGCCCTGGTGCCCACCGACGGCACGCTGCTGTCGCTGAGTTTCTTC AGCGGCCTGCTCAGCCACGATGCCGCCACCTTGCAGGCCGAGTTCGCCGCCGGTACGCCGATGTCGCGCATGGGCGCGCCGCTCAAGGCGATCGGCCAGG CCCTGCCGAACATGGCCGACATCGACTACCAGACCCTGGCCGGGGCCATCGCCACCTCGACCCATGGCACCGGGGTCGGCTTCAAGTCCTATTCGGCCCA GGTCTGCGGCCTGCAACTGGTGACCGCCAGCGGCGAGGTGCTGGACTGCGACGGCAGCCGCAACGCCGAGGTCTTCAGCGCCGCGCGGGTGTCCCTCGGT GCCCTGGGCGTCGCCACCCGGGTGTGCTTGCAGAATCGCCCGGCCTATCGCCTGCGGGAAAAACAGTGGATCGCCAAGACCGAGGAACTGCTCGAAGACC TGGCGAAAAACACCCGCGACAACCAGCACTGGGAAATGCTGGTGGTCACCCATTCCGACTACGCGCTGTCGATCGCCCTGAATGAAACCGAGGAGCCGGC GACCCCACCGGTGGACCCGGCACAAGAGGGCGGCAACGAGTTCGTCAGCCTGATCGAGAACCTCGACAAGTACCTCAGCGACTTTCCTGAGACCCGCCGC ACCCTGCTCAACAGCCTGCGGCATTTCGCCAGTTTCGACGATCGGGTCGGCGACTCCTACGAGGTCTACGCCAACGTGCGCAACGTGCGCTTCAACGAAA TGGAGTACTCGGTGCCGGCCGAGCATGGCCCGGCGTGCCTGCGGGAAATCCTCAAGCTGATCCGCGACAAGGACCTGCGCACCTGGTTTCCCATCGAGTA CCGCTACGTCCAGGCCGACGATATTCCCCTGAGCATGTTCGAGGGCCGCGACAGCTGTTCGATCTCGGTGCACCAGCACTACGGCATGGACCACCACAAC TTCTTCGCCGCCGTCGAACCGATCTTCTGGAAATACGCCGGCCGCCCGCATTGGGGCAAGTTGCACAGCCTCAACGCCCGGCAGTTGCAGGCGCTGTACC CGCGCTGGCGGGAATTCACCCGGGTGCGCGAGGCGCTGGACCCCGGCGGCAAGTTCCTCAATGCACACCTGTCGTCCATCCTGGGCGTGGTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGGGAGAAAAAAGCATGAATCGACGCAACTTCCTGCTCGGTACCGCAGGTGTCGGCGCGTTGTTGGCGGGGGTGGGGGCCTGGCTGCGGCCCGCCGACCG GGGCGGGCCCTACAGCGACTATTTCCGCGTGCTGAACCGGGAGCTCAAGGCCCACGGCCCGATGCGCCCGGTGATGCTGATCGACCTCGACCGCCTGGAC CACAACATCGATATGGTGCTGCAGTCGGTCAAGCGCGGCGGCAAGCAGCTGCGGCTGGTGGAGAAGTCCCTGCCATCGCCGGAGCTACTGGCCTACATCG GCCAGCGCGCCGGCACCCAGCGCCTGATGTCGTTCCACCAGCCGTTCCTCAATCACGACGCCCAGTGTTTTCCCGAGGCCGACATCCTGCTGGGCAAGCC GCTGCCGGTGCGCTCCGCCGAGCTGTTCTACCAGGGCCACAAAGGCCCGTTCGACCCGGCCCGGCAGTTGCAGTGGCTGATCGACACCCCGGAACACCTG
|
|
| Amino Acid Sequence |
>FAD-linked oxidoreductase
MTMHLTRRQLLQRSAVVGTFGALTSNPLLAELARAPRLIPWRNWSGAQSCLPLARLAPKDLDELVQVIRQTPGKIRPVGSGHSFSALVPTDGTLLSLSFF SGLLSHDAATLQAEFAAGTPMSRMGAPLKAIGQALPNMADIDYQTLAGAIATSTHGTGVGFKSYSAQVCGLQLVTASGEVLDCDGSRNAEVFSAARVSLG ALGVATRVCLQNRPAYRLREKQWIAKTEELLEDLAKNTRDNQHWEMLVVTHSDYALSIALNETEEPATPPVDPAQEGGNEFVSLIENLDKYLSDFPETRR TLLNSLRHFASFDDRVGDSYEVYANVRNVRFNEMEYSVPAEHGPACLREILKLIRDKDLRTWFPIEYRYVQADDIPLSMFEGRDSCSISVHQHYGMDHHN FFAAVEPIFWKYAGRPHWGKLHSLNARQLQALYPRWREFTRVREALDPGGKFLNAHLSSILGVV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|